Gene detail information of Glyur000003s00001171 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00230.1 | 0 | xylem serine peptidase 1 |
| NR | XP_004492669.1 | 0 | PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] |
| COG | YP_270567.1 | 2.00E-65 | serine protease [Colwellia psychrerythraea 34H] |
| Swissprot | tr|Q9LLL8|XSP1_ARATH | 0 | Xylem serine proteinase 1 (Precursor) |
| trEMBL | tr|G7L1F8|G7L1F8_MEDTR | 0 | Subtilisin-like serine protease {ECO:0000313|EMBL:AES80027.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 358488 | 364373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001171.1 | PF05922.11 | Inhibitor_I9 | 44 | 121 | 2.20E-09 |
| Glyur000003s00001171.1 | PF00082.17 | Peptidase_S8 | 146 | 539 | 1.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.447 |
| SRR1783600 | control | 0.454 |
| SRR1783602 | moderate drought stress | 0.450 |
| SRR1811619 | moderate drought stress | 0.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.427 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.280 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.046 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.318 |
| SRR2868004 | Drought Stress (root) | 5.141 |
| SRR2967015 | Control (root) | 6.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.226 |
| SRR9715740 | Leaf | 0.045 |
| SRR9715741 | Leaf | 0.124 |
| SRR9715739 | Root | 0.131 |
| SRR9715742 | Root | 5.433 |
| SRR9715743 | Root | 3.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.653 |
| SRR8400027 | Control - Root | 1.262 |