Gene detail

Gene detail information of Glyur000003s00001167.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45660.1	1.00E-59	AGAMOUS-like 20
NR	XP_004492667.1	1.43E-126	PREDICTED: MADS-box protein SOC1-like [Cicer arietinum]
Swissprot	tr\|O64645\|SOC1_ARATH	4.00E-93	MADS-box protein SOC1
trEMBL	tr\|A1XG54\|A1XG54_SOYBN	4.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G45780.1}

Sequence

Transcript Sequence

>Glyur000003s00001167.1
CGGAATAGGTGGATGAATAAGGAAAGGTCGGTCTGTGTCATCCTCTCCTATATATGCCCCTCAAAAACACATTTTTATTTTTCTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGCACTATAGTTTGCTCTCTTTTGGGTGCTTCCCTTTTCCCTTTTGTTTATTCATTCATCCTCAGTCCTCACCTCTTAATTGTTCTTCCCTTTTCTATACACAAAGGTTCTCTGTCAAAGATTTCTGGGATTTTGCCAAATTGGTGCAAATCTGCAAAAACCNCCCTTTCTAACTGCTTTCTGGGGGTTCAAGTGTTGTTTTGAAAGGCTCAATTTTGCTGGAAGTATCTTATATTGGCTACCAGAAAAGCTTAGTTTCTGGGGTTCAAATCCTACTTGAGAAGAATGGTGAGGGGAAAGACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGACAAGTGACATTCTCAAAGAGGAGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTGGCACTCATCATCTTCTCTCCAAGAGGAAAGCTCTATGAATTTGCAAGCTCCTGCATGCAGGACACAATTGAACGCTACCGCAGGCATACCAGGAGTGCTCAAGTGGTCCAAAGATCAGATGAACAAAATATGCAGAATTTGAAGCAAGAAACAGCAAGCTTGATGAAGAAAATTGAGCTTCTTGAAGCTTCAAAACGGAAACTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAATTGCAACAGATTGAACAACAGTTGGAAAAGAGTGTAAGCACTATTCGAGCAAAAAAGACTCAGGTTTACACGGAACAGATTGAGCAACTAAAAGAAAAGGAAANAGTCCTACTTGCTGAAAATGCCGAGCTCTCTGAGAAGTATGGTATGCAGCCACAGCCAACAACAAATGATCAGAGAGAAAATCAACCCTATGCAGAAAGCAGTCCAAGTTCAGATGTGGTTACTGAATTGTTCATTGGACTACACAGGTCTAGCTAAAGAAAATCTAATTAGTGTTTGTTTGGTTTTACATTCCAATGCATGTAAACGAACGTTTGCAACTAAGCAACAAAAATTCTTCCTTTAACGTTTACCTGCATTGGAACATGTGCAACTTCAGAAAACAAACATACCCTTAATATCCTTTGCTTATGCAAGTATAAAATAAGGGGAAGCCCAACTGTGTCTAATGTATAATATCGGATTGTATTTCCTATAGTTCTCGGAAGATGAATAATATTGACACTTGTAGTATATGAACTTCCACCAGGAGTATGTCTAGGGTCTAATATAAACGTTTTTCCTCATTCTTAAGTGTCAATTGATTGATGGCTTAAAATGTGGCCATATTAACTTTTGATTGTTTGATGTAAAGGAAAATTCTCTTTCCAATTGTTAGCTGCCTATTATTTATGAGGTGAGGAGAAAACCACTCTTTTTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	337399	347744	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001167.1	PF00319.13	SRF-TF	10	59	9.50E-28
Glyur000003s00001167.1	PF01486.12	K-box	80	171	1.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.451
SRR1783600	control	7.371
SRR1783602	moderate drought stress	7.641
SRR1811619	moderate drought stress	7.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.950
DRR006520	Root Summer glycyrrhizin high producing strain	32.862
DRR006521	Root Winter glycyrrhizin high producing strain	50.610
DRR006522	Root Winter glycyrrhizin high producing strain	49.365
DRR006523	Root Summer glycyrrhizin low producing strain	16.665
DRR006524	Root Summer glycyrrhizin low producing strain	16.891
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.656
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.700
SRR2868004	Drought Stress (root)	4.622
SRR2967015	Control (root)	5.517

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.330
SRR9715740	Leaf	38.015
SRR9715741	Leaf	31.618
SRR9715739	Root	6.129
SRR9715742	Root	10.579
SRR9715743	Root	11.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.729
SRR8749028	MeJA induced 9h	8.939
SRR8749029	MeJA induced 9h	13.486
SRR8749030	Uninduced	15.409
SRR8749031	Uninduced	20.133
SRR8749032	Uninduced	17.870

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.196
SRR8400027	Control - Root	8.651