Gene detail

Gene detail information of Glyur000003s00001163

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45630.2	2.00E-76	D-isomer specific 2-hydroxyacid dehydrogenase family protein
NR	XP_004492665.1	7.75E-179	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cicer arietinum]
COG	YP_004984622.1	5.00E-62	2-oxo/hydroxy acid reductase [Azospirillum brasilense Sp245]
Swissprot	tr\|Q9LE33\|HPR3_ARATH	2.00E-90	Glyoxylate/hydroxypyruvate reductase HPR3
trEMBL	tr\|G7L1F2\|G7L1F2_MEDTR	6.00E-134	Glyoxylate/hydroxypyruvate reductase HPR3 {ECO:0000313\|EMBL:AES80021.1}

Sequence

Transcript Sequence

>Glyur000003s00001163.1
ATGGGGGAGGTCATGAATGATTGCCATAGCAATAAATTACAACAAACCAAAGAGAAAGACCATCCAAATGTTCTTGTGATTGGTCCTCCAGGAAACTTGGGAGTCCTCAAACCAAAACACCCTCAAAAGTACAATTTATCAAAACCATGGACTACTTCACTCCCATTGCACCATTTCATGGTTGAGAACCACTATGACCCATCAAAGTTTCAAGCTCTCATATGCAGCCCATGGGGTCCTCCCATCAATGCCTTTGTTTCAAACTTGTCCCTTCTTGTTGTCACCACTAGCTCTGGAACTGATCACATAGATCTAAGGGAGTGTCATTCTCTTGGCATTCAGGTTGCTAATACAGGAGATTTGTATTCCCAAGATGTAGCTGACATGGCCCTTGCTTTGCTCATTGGTGTCCTAACTAAGATTTCAGCTGCAGACCGGTTTGTTAGAACACAGATGATGTTTGATGGTCCAAGGGACTTTCCACTTTGTTCTAACTCCAAGCTAAGGGGNAAGCGAGTTGGGATTGTTGGATTAGGAAACATTGGCATGGAAGTAGCTAAAAGGTTAGAGGCCTTTNGATGCATTATTTTGTACCTCTCAAGTAAGAAGAAGCCCTTTGTTTCATACCNTTTCTATTCCAACATGCTTGAGCTTGCAACCACTAGTGATGCACTAGTTCTTTGTTGTTCACTAAATGAGAAAACTAGGCACATGGTTAACAAGGAAGTCATGTTGGCATTGGGAAACAAAGGGGTCATAGTCAATGTTGGAAGAGGACCCCTTATTGATGAGAAGGAGTTGGTGAAGTGTCTTATGAAAGGAGAGATTGGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTAATGTTCCTCAAGAGCTTTTAGCAATGGACAATGTGGTTCTTTCACCACACAATGCTGCNTTCACTACTGAAACTTACATGGCTATCACTGAACTTGTGGAAGAGAATTTAGAAGCCATCTTCTCCAATAAGCCCTTAATCACACCAGTTAAATTGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	303978	306082	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001163.1	PF00389.25	2-Hacid_dh	92	338	4.20E-12
Glyur000003s00001163.1	PF02826.14	2-Hacid_dh_C	131	307	4.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.101
SRR1783600	control	0.102
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.347
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.360

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.746
SRR2868004	Drought Stress (root)	3.757
SRR2967015	Control (root)	4.330

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.185
SRR9715741	Leaf	0.032
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.563
SRR8400027	Control - Root	8.008