Gene detail information of Glyur000003s00001160 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61050.2 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_006602763.1 | 0 | PREDICTED: synaptotagmin-5-like [Glycine max] |
| Swissprot | tr|A0JJX5|SYT4_ARATH | 2.00E-86 | Synaptotagmin-4 |
| trEMBL | tr|K7MU26|K7MU26_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G45723.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 293673 | 299829 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001160.1 | PF00168.25 | C2 | 269 | 348 | 6.20E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.232 |
| SRR1783600 | control | 4.393 |
| SRR1783602 | moderate drought stress | 3.682 |
| SRR1811619 | moderate drought stress | 3.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.349 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.237 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.335 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.091 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.339 |
| SRR2868004 | Drought Stress (root) | 8.578 |
| SRR2967015 | Control (root) | 9.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.501 |
| SRR9715740 | Leaf | 1.362 |
| SRR9715741 | Leaf | 1.084 |
| SRR9715739 | Root | 1.009 |
| SRR9715742 | Root | 2.474 |
| SRR9715743 | Root | 2.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.826 |
| SRR8749028 | MeJA induced 9h | 11.086 |
| SRR8749029 | MeJA induced 9h | 12.014 |
| SRR8749030 | Uninduced | 7.312 |
| SRR8749031 | Uninduced | 8.001 |
| SRR8749032 | Uninduced | 5.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.030 |
| SRR8400027 | Control - Root | 10.496 |