Gene detail information of Glyur000003s00001159 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08500.1 | 5.00E-18 | early nodulin-like protein 18 |
| NR | XP_004492656.1 | 3.67E-96 | PREDICTED: lamin-like protein-like [Cicer arietinum] |
| Swissprot | tr|Q39131|LAML_ARATH | 2.00E-08 | Lamin-like protein (Precursor) |
| trEMBL | tr|V7B314|V7B314_PHAVU | 5.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:ESW11965.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 289751 | 291157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001159.1 | PF02298.12 | Cu_bind_like | 45 | 140 | 1.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.891 |
| SRR1783600 | control | 3.528 |
| SRR1783602 | moderate drought stress | 2.627 |
| SRR1811619 | moderate drought stress | 2.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.801 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.288 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.443 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.591 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.818 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.812 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.172 |
| SRR2868004 | Drought Stress (root) | 14.972 |
| SRR2967015 | Control (root) | 8.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.277 |
| SRR9715740 | Leaf | 5.090 |
| SRR9715741 | Leaf | 6.549 |
| SRR9715739 | Root | 9.741 |
| SRR9715742 | Root | 7.646 |
| SRR9715743 | Root | 9.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.216 |
| SRR8749028 | MeJA induced 9h | 11.660 |
| SRR8749029 | MeJA induced 9h | 13.624 |
| SRR8749030 | Uninduced | 4.190 |
| SRR8749031 | Uninduced | 2.906 |
| SRR8749032 | Uninduced | 1.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.824 |
| SRR8400027 | Control - Root | 6.858 |