Gene detail information of Glyur000003s00001158.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18030.1 | 1.00E-63 | HAL3-like protein A |
| NR | NP_001235269.1 | 1.73E-86 | uncharacterized protein LOC100499989 [Glycine max] |
| COG | YP_007204720.1 | 3.00E-23 | phosphopantothenoylcysteine synthetase/decarboxylase [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q9SWE5|HAL3A_ARATH | 4.00E-79 | Phosphopantothenoylcysteine decarboxylase |
| trEMBL | tr|C6SZ50|C6SZ50_SOYBN | 6.00E-87 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G02380.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 285730 | 286911 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01598 | PPCDC, coaC | EC:4.1.1.36 | Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001158.1 | PF02441.14 | Flavoprotein | 27 | 150 | 9.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.007 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.147 |
| SRR2868004 | Drought Stress (root) | 0.222 |
| SRR2967015 | Control (root) | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.576 |
| SRR8749028 | MeJA induced 9h | 0.421 |
| SRR8749029 | MeJA induced 9h | 0.217 |
| SRR8749030 | Uninduced | 0.015 |
| SRR8749031 | Uninduced | 0.432 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |