Gene detail information of Glyur000003s00001148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17700.1 | 2.00E-13 | cyclic nucleotide-binding transporter 1 |
| NR | XP_004515288.1 | 9.30E-24 | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9LD37|CNG20_ARATH | 1.00E-21 | Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor) |
| trEMBL | tr|V4TS71|V4TS71_9ROSI | 2.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:ESR54595.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 188240 | 201328 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.007 |
| SRR1783602 | moderate drought stress | 0.030 |
| SRR1811619 | moderate drought stress | 0.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.201 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.671 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.048 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.150 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.969 |
| SRR9715740 | Leaf | 10.615 |
| SRR9715741 | Leaf | 6.333 |
| SRR9715739 | Root | 0.145 |
| SRR9715742 | Root | 0.349 |
| SRR9715743 | Root | 0.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.582 |
| SRR8749028 | MeJA induced 9h | 1.445 |
| SRR8749029 | MeJA induced 9h | 0.747 |
| SRR8749030 | Uninduced | 3.494 |
| SRR8749031 | Uninduced | 1.673 |
| SRR8749032 | Uninduced | 4.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.636 |
| SRR8400027 | Control - Root | 1.562 |