Gene detail

Gene detail information of Glyur000003s00001144

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23920.1	0	beta-amylase 1
NR	XP_004515248.1	0	PREDICTED: beta-amylase 1, chloroplastic-like [Cicer arietinum]
COG	YP_005034908.1	8.00E-49	putative beta-amylase precursor [Bacteriovorax marinus SJ]
Swissprot	tr\|Q9LIR6\|BAM1_ARATH	0	Beta-amylase 1, chloroplastic (Precursor)
trEMBL	tr\|K7MJ07\|K7MJ07_SOYBN	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}

Sequence

Transcript Sequence

>Glyur000003s00001144.1
ATCCCGTGCTGTTGATGTATACTGGCTAATGCCTCGACACGTGCCAACTTTTCAATCTCACATGATCCTTCCCTCCCTCGACCCTTTTGAATATCTTTCTCTTCTCTTGGCTTATACGCTGTGTTCTGTTCCCATTCCATACACCCAACCGAAAATGCAGGTCACGACACGTGAGCAGTCACTTTCCACCACGTGTCTCCCCTCTACGCGACGTAGGGGATCTTTCGGCATCGCATTTTCTGGGAGCTTCACGCGCAAACTCCATCCCACCGTCCATTCCCCCCAATCAATCTCAGCCGTCCCCTTCCTCGAACCCCGCCACGCAACATCACAGGACACGTGTCGCAAANCAAACGGCCAAATCCAAAATATTATTATTTTAATCTTATCCACAAAACACGNTCCCTCCCTTTATAAAAACCCCCCTTCCCCCTTTCCTCCATTTGCTCACTGCAACCACTAAAACCGAACCAAACAGCAGAGAAGAAAAGAAAAAGAAAAACCAAAACGGTTTCATTTTTTCGGATTTCATTTTAATTTTATTTTCTNGCGAAAACTCGTGAAGAGAAAGGGGAAAATGGCGTTGAGCATGACTCACCAGATCGGAAGCCTCGTCGGAACGCCGGTGCCGTCGGAATCGGCGACGGGAGAGACGACAAACACAACGGCGGCGGTAAGCGCGGCTTCGGTGTGGAAATCTCCGGCGACGAGTCTACGGTGCACGGCGAGCAGATCGGAGGTGGCGGCGACGGAGGGACTATCGCCGCCGCTGAGTCCGCGAGGAATGAGACCGGATCTGTCGGTGGCGTGTCAGGCGTTTGAGACGGAGGTTGTTGAGAAGGAGCACGGAGAGGNAAGGAAGGGGAAAACGAAGGGGAAGGGTGGTGTTCCGGTGTATGTGATGATGCCGTTGGATAGCGTGACGATGGGACACGGTGTGAATAGGAAGAAGGCGGTGAATGCGGCGATGGCGGCGCTTAGGAGTGCCGGTGTGGAAGGGGTGATGATGGACGTGTGGTGGGGACTGGTGGAGAGNGAGAAGCCTGGTGAGTATAACTGGGGCGGTTATGTTGAGCTTATGGAAATGGCGAAGAAGCATGGCCTCAAGGTGCAGGCGGTTATGTCGTTTCATCAATGTGGCGGTAACGTCGGCGATTCCTGCACTATTCCCTTGCCCAAATGGGTTGTGGAGGAGATTGATAAAGATCCCGATCTTGCATATACTGATCAATGGGGAAGAAGAAACTACGAATATTTATCACTTGGATGTGACACTTTGCCAGTACTCAAAGGCCGATCACCAGTTCAATGTTATGCTGATTTCATGCGTGCTTTCNGAGACAATTTCAAGCACCTTCTTGGTGACACCATTGTGGAAATCCAAGTTGGNATGGGACCAGCTGGTGAGCTGCGTTACCCATCATACCCAGAGCAAAATGGGACATGGAAATTCCCAGGAATTGGTGCTTTCCAATGCTATGACAAGTATATGTTGAGTAGCCTAAAAGCAGCTGCTGAAGCTTCTGGTAAGCCAGAATGGGGAAGCACAGGCCCTACTGATGCTGGCCACTACAACAACTGGCCAGAAGACACTCCATTTTTCCGCAAAGAAGGTGGAGGCTGGGGTGGTCAATATGGAGAGTTTTTCCTCACCTGGTACTCTCAGATGCTGTTGGACCATGGTGAGAGGATTCTCTCATCAGCAAACTCAATCTTTGATAACAGTACTGGAGTCAAGATATCAGTAAAAGTTGCTGGTATTCACTGGCACTATGGTTCAAGGTCTCATGCTCCAGAACTCACAGCAGGGTATTACAACACCCGTTTCCGAGATGGGTACCTCCCCATAGCTCAAATGCTTGCACGCCATGGTGCTGTTTTCAACTTCACGTGCATNGAGATGCGTGATCACGAGCAGCCTCAGGATGCTCTGTGTGCACCAGAGAAGCTGGTGAAGCAAGTGGCTTTAGCTACACAGAAGGCACAGGTACCACTTGCTGGGGAAAATGCATTGCCAAGGTATGATGAGTATGCACATGAGCAGATCATAAAGGCTTCTCAGTTGGATGTTGAGGGTAACTCAGATGACATTGAGATGTGTGCATTCACATACCTGAGGATGAACCCACACCTGTTTCAACCTGATAACTGGAGGAAGTTTGTGGCGTTTGTGAAGAAGATGAAGGAAGGGAAAAGTGCTGACAAGTGTTGGGAGCAGGTGGAGAGGGAAGCAGAGCATTTTGTGCATGTTACTCAGCCTCTTGTGCAAGAGGCTGTTGCAATGATGCACTAAGAATTGTTTTGTGAACCTCCTCTTTATATGATAGGAGACTTAATTAGGAAACAGTTTCACAGGTAGGCTGTGGAAGTTTTAGTGAACCAGCAGCCTAGATCAGTTGTGGCTAAAGATCGATGNACTATAATTTTGTATTATATTGTTTGTGTTCTTATATCATCATGTTATTTGCACCTAAAACTTCTATTTGTTACCCCCTTCATATGGGGGGGTAGCGTTCTTAAAAGTTGTACTTGTACAAAAGTTGTNATATTTATTTCTATATCATTAAATCAATGTTACTGGTGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	158794	165838	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01177	E3.2.1.2	EC:3.2.1.2	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0000272 polysaccharide catabolic process

GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016161 beta-amylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001144.1	PF01373.12	Glyco_hydro_14	107	531	1.20E-129

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.404
SRR1783600	control	24.457
SRR1783602	moderate drought stress	18.879
SRR1811619	moderate drought stress	18.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	91.905
DRR006520	Root Summer glycyrrhizin high producing strain	91.081
DRR006521	Root Winter glycyrrhizin high producing strain	73.585
DRR006522	Root Winter glycyrrhizin high producing strain	71.690
DRR006523	Root Summer glycyrrhizin low producing strain	136.102
DRR006524	Root Summer glycyrrhizin low producing strain	136.794
DRR006525	Leaf Summer glycyrrhizin high producing strain	231.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	228.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.453
SRR2868004	Drought Stress (root)	44.323
SRR2967015	Control (root)	50.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	410.476
SRR9715740	Leaf	291.250
SRR9715741	Leaf	440.328
SRR9715739	Root	172.406
SRR9715742	Root	290.123
SRR9715743	Root	254.453

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.292
SRR8749028	MeJA induced 9h	53.564
SRR8749029	MeJA induced 9h	46.139
SRR8749030	Uninduced	23.608
SRR8749031	Uninduced	35.176
SRR8749032	Uninduced	40.856

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	127.554
SRR8400027	Control - Root	133.080