Gene detail

Gene detail information of Glyur000003s00001134

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
NR	XP_003548311.1	PREDICTED: protein argonaute 1-like [Glycine max]
Swissprot	tr\|O04379\|AGO1_ARATH	Protein argonaute 1
trEMBL	tr\|I1MQL3\|I1MQL3_SOYBN	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur000003s00001134.1
AGGGTAGTAGAACCTAATAGCTAGGGTAGGGACGGAGTGGTCATTTTCAAGGACCTACACCATCTTTATAATAATAAATAACTTGTCCAATTCACAGCTTTCGTGCGGTTTTTCTCTCTAACCCACACACCAGCAGCATTCGCTCTTCTCTCTATCTGTTTTCTCTCTCTATAGGCTCTTCTNCTCCCAAATTCTAGTGAGAGAAAACTTACTCTTCTTTGAGTCTTTCTCTTCACCTTCTTCTTCTCTGCTTCACTCCCTCCGCTTCGCAACCACCTTTCCTTCTTTTCAGCTTTCATCATGGTCAGAAAGAAGAGAACCACCGAAGGACCTAGTGGGGGTGAGAGCTCTGAGACTCAACGCCCTGCTGAAAGGAGTGCTCCACCTCAACAACAAGCTGCTGCTGCCGGAGGTGCAGGACCACCCCAAGGAGGTCGAGCTTGGGGCCCCCCAGGTGGACGTGGGGGATACAGCGGTGGACGTGGCCGTGGAATGCCCCAACAGCAGTATGGTGCTCCCCCTGACTATCAAGGCAGGGGGAGGGGAGCGTCTTCTCAGCAAGGAGGTCGTGGAGGATATGGCGGTTATGGAGGATATGGCGGTGGCCGTGGTGGCCGCAGTGGTGGTGGTCCGGGCGGTGGCCATGACATAGGTCCTTCATATGGTGGCCCACCTAAGCCACCATCACCCGAGCTGCACCAAGCTACATCAGTTCCGTATCAAGCTGGGGTGACTCCTCAGCCTGCATCATCTGAGGCAGGTTCATCATCTTCCCTGCCACAGGAAGTTTCTGAAGCGGAACAGCAAATGGGGCAGATGACAATTCATTCTGAAGCTACTCCTGCTCCTCCCCCATCAAGCAAATCGTCAATGAGGTTTCCCCTTCGCCCTGGAAAGGGGAGCTATGGCACTAAATGTGTTGTCAAGGCTAACCATTTCTTTGCTGAGTTGCCCAATAAGGATCTGCATCAGTATGATGTAACAATTACTCCAGAAGTGACTTCAAGGGGTGTGAACCGTGCTGTTATGGAGCAGCTTGTGAGACTGTACCGTGAATCTCATCTGGGAAAGAGACTTCCTGCTTATGATGGCCGCAAGAGCCTCTATACTGCAGGGCCACTTCCTTTTATCTCAAAGGAGTTCAGAATCACTCTAGTTGATGAAGACGATGGGGCTGGAGGGCAGAGGAGGGACAGAGACTTTAAAGTTGTGATAAAATTGGCTGCACGGGCAGACCTTCACCACCTGGGACTCTTTTTGGAGGGGAGGCAAACAGATGCACCNCAGGAAGCTCTGCAAGTTCTTGACATTGTTCTCCGTGAACTTCCTACTACCAGGTATTGTCCAGTGGGAAGATCATTTTATTCACCTGATCTGGGCAGAAGGCAGCCTTTAGGTGAGGGACTGGAAAGTTGGAGAGGTTTCTACCAAAGCATTCGGCCTACTCAAATGGGACTGTCTCTGAACATTGACATGTCCTCGACTGCTTTCATTGAGCCATTGCCAGTAATTGACTTTGTAACTCAATTGCTGAACAGGGATGTCTCCGCCCGACCACTGTCTGATGCTGATAGAGTAAAGATCAAAAAGGCTCTACGTGGTATCAAAGTTGAAGTCACTCATCGTGGAAACATGAGGAGAAAGTATCGTATCTCTGGTCTGACTTCACAGGCTACTAGAGAGTTGACATTCCCTGTGGATGAGAGGGGAACCATGAAGTCTGTTGTTGAATATTTCTATGAGACATATGGCTTTGTCATTCAACATATTCAGTGGCCTTGTTTGCAAGTGGGCAATACTCAGAGACCAAACTACCTACCAATGGAGGTTTGCAAGATAGTAGAAGGCCAAAGGTACTCAAAGAGGTTGAATGAGAGGCAGATCACTGCTTTGCTAAAAGTCACATGCCAGCGTCCTGTTGAGAGNGAGCGTGATATCATGCAGACAGTACATCACAATGCCTATCATCAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCCCCTTGGAAAATGGTCAATGGAGGAACAGTCAACTACTGGTTCTGCATAAACTTTTCAAGGAATGTTCAAGATAGTGTTGCACGTAGCTTTTGCTATGAGCTTGCCCAGATGTGTTATATTTCTGGCATGGCATTTAATCCAGAGCCAGTAGTTCCTCCACTTAGTGCTCGTCCTGACCAAGTGGAAAAGGTTTTAAAAACGCGGTACAATGATGCCAAGAACAAACTACAGGGGAGGGAACTTGATCTGCTCATTGTCATTTTGCCTGATAATAATGGCTCTCTTTATGGTGATCTCAAACGTATATGTGAGACTGATCTGGGGGTTGTTTCACAGTGTTGTTTAACTAAACATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCCTTGAAAATTAATGTGAAGGTTGGAGGAAGGAATACTGTGCTTGTTGATGCACTTTCTCGACGCATTCCATTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTGACTCATCCACACCCTGGAGAGGATTCAAGTCCATCAATAGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACCAAGTATGCCGGTTTGGTTTGTGCCCAAGCACATCGACAGGAGCTCATTCAAGATCTGTTCAAACAATGGCAAGACCCAAACAGGGGAACATTAACTGGTGGAATGATCAAGGAACTTCTTATATCTTTCCGGAGGGCTACAGGACAAAAGCCGCAGCGCATTATATTTTACAGGGATGGAGTAAGCGAGGGACAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCCATCCGAAAGGCTTGTGCATCCCTTGAACCCAACTATCAACCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCATCACACTAGGCTCTTTGCCAGTAACCATCATGACAAGAGTTCTGTTGACCGGAGCACAGTGGTGGACTCTAAGATCTGCCATCCAACTGAATTTGACTTCTACCTTTGTAGTCATGCTGGAATACAGGGTACAAGCCGTCCAGCTCATTACCATGTGCTTTGGGATGAAAATAATTTCACTGCTGATGCTTTACAAACTCTAACAAACAACCTGTGCTACACATATGCCAGATGCACTCGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCCCATTTGGCTGCATTTCGAGCTCGGTTCTACATGGAACCTGAGACTTCAGACAGTGGGTCGATGACAAGTAGTGCTGTGGCTGGGCGCGGAATGGGTGGCGGCGCAGGGCGTAGTACTCGGGCACCTGGTGCCAGTGCGGCTGTGAGACCCCTGCCTGCACTCAAGGACAATGTCAAGAGGGTTATGTTTTACTGCTGATCATGTTCTTCATGCCTCTCTAGTATGTTTGAAGTTATGAAGTACTATCGACTTTTTCTGGTCTAGTAGTAGTTGTTTTGGAAGTATCTTCAGATATTTGCCAAGTGCGCCTCTTTATGTTGTTCTTGTTTTTCTCAAATATTTGTCGTTAGGAGTTTAACTNGATGCGAACTATGTTTTACCATTGTTAAGTGTTGGATCTTTTAATGATGCAAACTATGTTTTCTTCAGATATTTCCAA

Protein Sequence

>Glyur000003s00001134.1
MVRKKRTTEGPSGGESSETQRPAERSAPPQQQAAAAGGAGPPQGGRAWGPPGGRGGYSGGRGRGMPQQQYGAPPDYQGRGRGASSQQGGRGGYGGYGGYGGGRGGRSGGGPGGGHDIGPSYGGPPKPPSPELHQATSVPYQAGVTPQPASSEAGSSSSLPQEVSEAEQQMGQMTIHSEATPAPPPSSKSSMRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLVDEDDGAGGQRRDRDFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHIQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVEXERDIMQTVHHNAYHQDPYAKEFGIKISEKLAQVEARILPAPWKMVNGGTVNYWFCINFSRNVQDSVARSFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYNDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPNRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSSAVAGRGMGGGAGRSTRAPGASAAVRPLPALKDNVKRVMFYC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	35053	42265	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001134.1	PF12764.2	Gly-rich_Ago1	71	181	2.10E-20
Glyur000003s00001134.1	PF08699.5	DUF1785	349	400	3.10E-23
Glyur000003s00001134.1	PF02170.17	PAZ	402	537	1.80E-36
Glyur000003s00001134.1	PF02171.12	Piwi	666	979	2.30E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.699
SRR1783600	control	95.155
SRR1783602	moderate drought stress	116.374
SRR1811619	moderate drought stress	115.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.834
DRR006520	Root Summer glycyrrhizin high producing strain	81.981
DRR006521	Root Winter glycyrrhizin high producing strain	46.371
DRR006522	Root Winter glycyrrhizin high producing strain	45.072
DRR006523	Root Summer glycyrrhizin low producing strain	67.069
DRR006524	Root Summer glycyrrhizin low producing strain	67.023
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.656

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	158.114
SRR2868004	Drought Stress (root)	173.709
SRR2967015	Control (root)	183.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.602
SRR9715740	Leaf	57.876
SRR9715741	Leaf	71.183
SRR9715739	Root	50.761
SRR9715742	Root	141.262
SRR9715743	Root	118.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.240
SRR8749028	MeJA induced 9h	61.356
SRR8749029	MeJA induced 9h	47.730
SRR8749030	Uninduced	33.123
SRR8749031	Uninduced	33.437
SRR8749032	Uninduced	41.156

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	186.224
SRR8400027	Control - Root	186.410