Gene detail information of Glyur000003s00001130 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14590.1 | 2.00E-101 | Nucleotide-diphospho-sugar transferase family protein |
| NR | XP_003620328.1 | 0 | hypothetical protein MTR_6g081060 [Medicago truncatula] |
| Swissprot | tr|P0C042|Y4597_ARATH | 3.00E-94 | Uncharacterized protein At4g15970 |
| trEMBL | tr|G7KM25|G7KM25_MEDTR | 0 | Nucleotide-diphospho-sugar transferase family protein {ECO:0000313|EMBL:AES76546.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 1537 | 10486 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001130.1 | PF03407.11 | Nucleotid_trans | 128 | 326 | 1.20E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.278 |
| SRR1783600 | control | 2.267 |
| SRR1783602 | moderate drought stress | 2.452 |
| SRR1811619 | moderate drought stress | 2.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.953 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.857 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.850 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.563 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.472 |
| SRR2868004 | Drought Stress (root) | 48.653 |
| SRR2967015 | Control (root) | 35.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.960 |
| SRR9715740 | Leaf | 8.945 |
| SRR9715741 | Leaf | 11.437 |
| SRR9715739 | Root | 1.217 |
| SRR9715742 | Root | 2.796 |
| SRR9715743 | Root | 2.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.454 |
| SRR8749028 | MeJA induced 9h | 27.576 |
| SRR8749029 | MeJA induced 9h | 26.554 |
| SRR8749030 | Uninduced | 29.146 |
| SRR8749031 | Uninduced | 40.303 |
| SRR8749032 | Uninduced | 14.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.802 |
| SRR8400027 | Control - Root | 9.273 |