Gene detail

Gene detail information of Glyur000002s00000359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68400.1	0	leucine-rich repeat transmembrane protein kinase family protein
NR	XP_007142938.1	0	hypothetical protein PHAVU_007G029900g [Phaseolus vulgaris]
COG	YP_001958461.1	6.00E-22	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|V7BAM5\|V7BAM5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14932.1}

Sequence

Transcript Sequence

>Glyur000002s00000359.1
CCCGCATTATTACTCCCTCTTCATTACCGTTAAGCCCTTTCATTTTCTCATTAATTACAAACTTAACACTCTGCTTCACACATTCACAACCGCGCTCTCACCGTTATTCACTCCTCACTTCTCTCTCTCTCTGTTCTCTTTGCAGAGCAACAATGGCGGCAACACCGTCCCATCTCATTGCTCCTCTTATGGTTTTCCATTTTCTTCTCCTGGTTCAAGGTTCCATGAACCCAGATTTCGAAGCTCTTTTGGCCTTCAAAACCGCTTCAGACACATCCAAAAAGCTCACATCTTGGAACACCAGCAGCACCAACCCATGCTCCTGGGGCGGCGTTTCGTGCATCAGGGACCGAGTCTCGCGACTCGTTCTTGAAAACCTCGACCTCCAAGGCTCCATCGAGCCCTTAACTTCTCTGACTCAGCTCCGAGTCCTGAGCCTCAAGGGGAACCGTTTCTCCGGTCCCGTTCCGAGCCTCTCCAACCTCACCGCACTTAAACTTCTCTTCTTGTCTCACAACGAGTTCTCCGGCGAGTTCCCAGCGTCCGTCACGTCGCTTTTCCGCCTGTACCGCCTCGATCTGTCACACAACAATTTCTCCGGCGAGATTCCGGCGACGGTCAACCGTCTGACCCACCTCCTTACTCTCCGTCTCGACGACAACCGGTTCTCCGGCCTCATTCCCGAAGTGAACCTTCCAGGCCTGCAAGACCTCAACGTCTCCGGAAACCGCCTCTCCGGCGAGATACCAAAGTCGCTGTCGGGTTTCCCCCAATCCTCTTTCGGGCAAAACCCGTTTCTGTGTGGAGCTCCGTTGGAGAAATGCGTGGCGGAACCGAGCAAACCCGGATCCGAAGGTGCCATTGCTTCCCCACTGGTTCCAGTTCCACGCGGCAACATTCCCACAACGGTGTCGTCTTCACCGAGCACAATGCCAACAACACCACCGAACAATAACGGAAGCCATCAAAACGGGGCGTCCAAAATGAGTCCCGTGGCTTTGATAGCGATAATAGTGGGCGATGTTCTGGTCCTTGGCATAGTGTGTTTGCTTCTCTATTGCTACTTCTGGAGAAGCTACTCTGCGAAGCTGAAGGAGGGAAAGGGTTCGAAGCTTTTTGAGAGTGAAAAGATCGTTTATTCGTCGAGTCCTTACCCTGCTCAGGCAGGGTTTGAGAGGGGTAGAATGGTGTTTTTCGAAGGGGAGAAGAGGTTTGAACTGGAGGATTTGCTTCGGGCATCTGCGGAAATGCTTGGGAAAGGTGGGTTTGGAACGGCATACAAAGCGGTCCTTGATGATGGGAACGTTGTTGCGGTGAAGAGGCTGAAGGATGCGCAGATTTCGGGGAAGAGGGAGTTTGAACAGCACATGGAAGTGCTGGGAAGGATGAGGCACCCTAACATTGTTAGCTTGAGGGCTTACTATTTTGCAAGAGAGGAGAAGCTCCTCGTCTATGATTTCATGCCCAATGCCAGTTTGTTCTGGCTCCTTCATGGGAACCGAGGACCCGGAAGAACCCCACTGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCACGAGGCGTGGCTTTCATTCACTCCTCGTGCAAGTCCCTCAGGCTCACCCACGGTAACATCAAATCCACCAACATCCTCCTCGACAAGCAGGGGAACGCGCGCGTCTCTGATTTTGGGCTCTCCATCTTCGCGGGCCCGGCCCATGGCCCAGCTGGAGGGAGATCCAACGGCTACCGTGCCCCCGAGGCATTGGACGGTCGAAAACAGTCCCAGAAGTCTGACGTGTACTCTTTTGGGGTTCTCCTTCTGGAGCTGCTTACGGGGAAGTGCCCCTCCGCCGTGGACGGTGGTGGTGGTGGGCCAGGGAGTGGGTACGGTGGTGGGGCTGTGGATCTTCCAAGGTGGGTCCAGTCAGTGGTGAGAGAAGAGTGGACTGCTGAGGTGTTTGATTTGGAGCTGATGAGGTACAAGGATATTGAGGAGGAGATGGTGGGGTTGCTTCAGATTGCCATGTCATGTACTGCGGCTGCACCTGATCAACGGCCCAGGATGTGCCACGTGGTCAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCACCCTGTCATGACACGTTGGACTCGGTTTCCGAGTCGCCTTCCTTGTCTGAAGATGCCTGTGGAACTAGTCAGTAAAAAGCTTTGGAGGGACACTGGGGCTATAAGTACTAGGTAGGTATGGTGGTATTGTAAATCAGATTATTATTGGGGGTTTTTTTTTTCTTTCTCTTCAAATTTTGTTCTTTTTTNCGCTTATTTTTATTGAACACTGATCTATGGCCCTCCATGCAACACCAAATCAACGCCATGATATGACATTTAATACATTAAGTGAGTATTGATTTGGTGATTAAGTGTTCATGAAACATTTTTTATTTTTATTTATCTCGTAGGAGTAGTATTTGTTTTACGATCCTTTTGCCCATTTTCCTGAATGCCAAGTTAATTTTTCGCTAATTAATGCAACGGGAAATGGTGTTTATTTGTGGGGCGGTGGGTTGTAATTGAAATTTGAAGATAAAGAGGCCTTTTCTTTCTCAAGTTTAGGGTTTAGGCCTCTCTTTCTCTAGTTTGTCGACTAGCATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	907591	911008	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000359.1	PF08263.7	LRRNT_2	26	63	9.80E-12
Glyur000002s00000359.1	PF12799.2	LRR_4	89	125	2.00E-06
Glyur000002s00000359.1	PF13855.1	LRR_8	137	194	2.20E-06
Glyur000002s00000359.1	PF00069.20	Pkinase	365	562	3.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.337
SRR1783600	control	3.361
SRR1783602	moderate drought stress	2.166
SRR1811619	moderate drought stress	2.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.215
DRR006520	Root Summer glycyrrhizin high producing strain	2.097
DRR006521	Root Winter glycyrrhizin high producing strain	0.866
DRR006522	Root Winter glycyrrhizin high producing strain	0.991
DRR006523	Root Summer glycyrrhizin low producing strain	1.699
DRR006524	Root Summer glycyrrhizin low producing strain	1.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.516

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.590
SRR2868004	Drought Stress (root)	6.300
SRR2967015	Control (root)	8.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.974
SRR9715740	Leaf	0.494
SRR9715741	Leaf	2.728
SRR9715739	Root	8.570
SRR9715742	Root	5.493
SRR9715743	Root	5.665

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.646
SRR8749028	MeJA induced 9h	3.512
SRR8749029	MeJA induced 9h	5.373
SRR8749030	Uninduced	1.294
SRR8749031	Uninduced	4.772
SRR8749032	Uninduced	13.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.281
SRR8400027	Control - Root	11.396