Gene detail

Gene detail information of Glyur000002s00000358.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68390.1	2.00E-112	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_004497066.1	0	PREDICTED: uncharacterized protein LOC101490811 [Cicer arietinum]
trEMBL	tr\|A0A072W1N5\|A0A072W1N5_MEDTR	0	Core-2/I-branching enzyme {ECO:0000313\|EMBL:KEH44200.1}

Sequence

Transcript Sequence

>Glyur000002s00000358.1
TTATATTTATTTATTGGTTTCTTGTAACGCAAAATTGTTAATATATAATTTTCTACAGGTTTCCAAAACCATCGATAACAGTTGGCAAGTTCAGCTTTTTTAACGAAGCCGTTGTTATAATTTCTATCGGAGCAAAAACCAAAGGGCAATTATAAAGTGGGCATCGAGGACTCAGAAAGAGAGACCCTCCTTCCTATTCATTCATTGGTCTTCTCTTCAAAGCCATCAACACTGTTTATGGGTCTGTCTGTGACTGCATAAATTTGAGCCAAGGGAGATAGCTTTTCTATATATCTGCTTTTCCCTATCTCTCTCTGGACTTTCACAGCTTTAAATTCTGTCCTTAATTTCTCTCTTCCTCACCCCACCCCCCTTTAGTGTTAATTATCATAATTTTGGACCAATTTGACTCTAGGCAATCCTTTTTTTGTTGAATACTTTCTTCATTTGATCTTGTGGGTTATGGTAATTTATGACTATAGAGATATTTTAATTAGAAGATAAGGTTGTTGCTCATCTTTTTGAAGTATTAATTTCATCAATACAAAAAGCCATACTTTTAATTCTTCTTCTTTATAAGCATACAACTTAGGTAACTACCCGTTACTATATATAGACACCCATTTAATACAGAATTATTTGGGAATTTTCTCTCTTGTCTGAGAGGAAAATGAAGGGCTCCTCAAATAACCAATACCCATCAAACTCTGTTTCCAAGCTCTTCAATATTCAGCTCCACTTTGTTCATGTTCTTACCTATATCCTTATTTTGGTCTTTGGTCTAACCCTTGGAATTATGATCAGTTTCTACCTTAAAGAGTGCACCTTTAGTCTACAATTCACTCAGTTGTCACTCTCTTCCTTACCAAGAACCCCACCTTTGCAACCACCACCACCTCCACCGATTGCAAAACTAGAAACATCTAATCACACTAGCCGTGTGGGATTGAAGGAGTTCCTTAAGCCTCCTAAGATTATGCATGATATGGATGATGAGGAATTGCTTTGGAGAGCTTCTATGACTGCAAAGATCCATGAATACCCGTTTGATCGAGTCCCCAAGGTTGCCTTCATGTTCTTGACAAGGGGTCCTGTGTTTTTGGCACCTTTGTGGGAACAGTTCTTCAAAGGGCATGAAGGGTATTACTCAATTTACGTGCATTCCAATCCTTCTTATAATGGATCACACCCTGAGAGTCCAGTGTTTCAGGGTCGGAGAATTCCCAGTGAGGAAGTACAATGGGGCAATGTGAACATGATTGAAGCTGAGCGTCGCCTGCTGGCCAATGCACTTCTTGACATCTCAAACCAACGATTTGTTCTCCTATCAGAATCCTGCATACCACTCTTCAACTTCTCCACCATCTACTCCTACCTAATAAACTCTACCCAAAACTATGTCATGGCTTTTGATGAGCCAAGTGCCGTTGGTCGCGGCCGCTACAACATCCACATGTTGCCTGTGGTTACCCTCAGGCAATGGAGAAAAGGGTTCCAATGGTTTGAAATGGACAGAGACCTTGCACTCGAAGTGGTCTCTGATAGAACATACTTCCCAGTTTTCCAAGAGTACTGCAAAGGTTCATGTTATTCGGATGAACATTACTTGCCAACCTTTGTGAGCATCAAGTTTTGGGAGGGGAATTCAAATAGGAGTTTGACTTGGGTTGACTGGTCAAGGGGTGGTCCACACCCTGCACATTTTTTGAGGTCCGATGTCACTGTTGAGTTCTTGGAGCGTTTGAGGAGCAAGAGATGCAAGTATAATAATGGGAACAGCACCAATGCATGTTTTCTGTTTGCTAGGAAGTTCTTGCCTAGTACTTTGTCAAAGCTCATGAAGATTGCACCCGAGGTTATGCATTTCGAACACACTACTCTAGGTACACAAAACAACAAGTTTGATCTAAAAACAATTATTTAATTCATTTTTTTCTTCTTCATCTTGTAAGTTGTTTCATTGTCCAGTGTAGACTAAGTTTTTTCCATTTGCTTCATGGATATATCTGTTAATGAGTTTTTTTATTGGATCTTGTAACAACAAACAATCCAAAGCCATCAAAGATAATTGAAGGGCTAGATAATTGCCTCTTCCTGTTTTGCACGCTCCTTGATGGTAAAAAATGACATCACAGATCCCAATTAAATTTTGCTAATGTTAATCTCAACTAGACATGCTTTTCTTTACAAAACCCATTTCAGACCACGTTCAGTCAATTATTGAACTGACCCAATGAATGTCTTCACCAACCGCGACGCCAAAGCATGCTAGTCGACAAACTAGAGAAAGAGAGGCCTAAACCCTAAACTTGAGAAAGAAAAGGCCTCTTTATCTTCAAATTTCAATTACAACCCACCGCCCCACAAATAAACACCATTTCCCGTTGCATTAATTAGCGAAAAATTAACTTGGCATTCAGGAAAATGGGCAAAAGGATCGTAAAACAAATACTACTCCTACGAGATAAATAAAAATAAAAAATGTTTCATGAACACTTAATCACCAAATCAATACTCACTTAATGTATTAAATGTCATATCATGGCGTTGATTTGGTGTTGCATGGAGGGCCATAGATCAGTGTTCAATAAAAATAAGCGNAAAAAAGAACAAAATTTGAAGAGAAAGAAAAAAAAAACCCCCAATAATAATCTGATTTACAATACCACCATACCTACCTAGTACTTATAGCCCCAGTGTCCCTCCAAAGCTTTTTACTGACTAGTTCCACAGGCATCTTCAGACAAGGAAGGCGACTCGGAAACCGAGTCCAACGTGTCATGACAGGGTGACACCTCGACCCCACGCAACTCCTCAATCATCTTGACCACGTGGCACATCCTGGGCCGTTGATCAGGTGCAGCCGCAGTACATGACATGGCAATCTGAAGCAACCCCACCATCTCCTCCTCAATATCCTTGTACCTCATCAGCTCCAAATCAAACACCTCAGCAGTCCACTCTTCTCTCACCACTGACTGGACCCACCTTGGAAGATCCACAGCCCCACCACCGTACCCACTCCCTGGCCCACCACCACCACCGTCCACGGCGGAGGGGCACTTCCCCGTAAGCAGCTCCAGAAGGAGAACCCCAAAAGAGTACACGTCAGACTTCTGGGACTGTTTTCGACCGTCCAATGCCTCGGGGGCACGGTAGCCGTTGGATCTCCCTCCAGCTGGGCCATGGGCCGGGCCCGCGAAGATGGAGAGCCCAAAATCAGAGACGCGCGCGTTCCCCTGCTTGTCGAGGAGGATGTTGGTGGATTTGATGTTACCGTGGGTGAGCCTGAGGGACTTGCACGAGGAGTGAATGAAAGCCACGCCTCGTGCCGCTCCAGCTGCTATCTTGAGCCTCGTGGTCCAGTCCAGTGGGGTTCTTCCGGGTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	903882	908717	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000358.1	PF02485.16	Branch	132	359	2.80E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.347
SRR1783600	control	1.284
SRR1783602	moderate drought stress	1.205
SRR1811619	moderate drought stress	1.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.168
DRR006520	Root Summer glycyrrhizin high producing strain	4.105
DRR006521	Root Winter glycyrrhizin high producing strain	2.672
DRR006522	Root Winter glycyrrhizin high producing strain	2.637
DRR006523	Root Summer glycyrrhizin low producing strain	3.486
DRR006524	Root Summer glycyrrhizin low producing strain	3.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.749
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.696

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.441
SRR2868004	Drought Stress (root)	5.325
SRR2967015	Control (root)	5.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.439
SRR9715740	Leaf	30.384
SRR9715741	Leaf	50.318
SRR9715739	Root	15.790
SRR9715742	Root	22.473
SRR9715743	Root	21.102

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.446
SRR8749028	MeJA induced 9h	66.312
SRR8749029	MeJA induced 9h	106.624
SRR8749030	Uninduced	65.684
SRR8749031	Uninduced	131.628
SRR8749032	Uninduced	119.932

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.578
SRR8400027	Control - Root	6.208