Gene detail information of Glyur000002s00000357 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52330.2 | 3.00E-36 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004486729.1 | 3.48E-95 | PREDICTED: uncharacterized protein LOC101505811 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A076L4S1|A0A076L4S1_CICAR | 2.00E-95 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AII99859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 902081 | 902629 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000357.1 | PF03168.8 | LEA_2 | 86 | 180 | 3.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.298 |
| SRR1783600 | control | 14.630 |
| SRR1783602 | moderate drought stress | 25.887 |
| SRR1811619 | moderate drought stress | 19.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.496 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.271 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.102 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.099 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.100 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.397 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.630 |
| SRR2868004 | Drought Stress (root) | 0.777 |
| SRR2967015 | Control (root) | 1.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.236 |
| SRR9715740 | Leaf | 15.677 |
| SRR9715741 | Leaf | 14.314 |
| SRR9715739 | Root | 15.212 |
| SRR9715742 | Root | 13.638 |
| SRR9715743 | Root | 12.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.057 |
| SRR8749028 | MeJA induced 9h | 0.244 |
| SRR8749029 | MeJA induced 9h | 0.368 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.822 |
| SRR8400027 | Control - Root | 2.382 |