Gene detail information of Glyur000002s00000356 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G25375.1 | 2.00E-150 | Metallo-hydrolase/oxidoreductase superfamily protein |
| NR | XP_004497067.1 | 0 | PREDICTED: uncharacterized protein LOC101491135 isoform X1 [Cicer arietinum] |
| COG | YP_003302406.1 | 1.00E-21 | beta-lactamase domain-containing protein [Thermomonospora curvata DSM 43183] |
| trEMBL | tr|G7IC92|G7IC92_MEDTR | 0 | Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:AES62879.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 892985 | 900101 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000356.1 | PF00753.22 | Lactamase_B | 213 | 342 | 1.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 125.488 |
| SRR1783600 | control | 125.100 |
| SRR1783602 | moderate drought stress | 78.118 |
| SRR1811619 | moderate drought stress | 77.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 80.844 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 78.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.614 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.479 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 309.280 |
| SRR2868004 | Drought Stress (root) | 186.182 |
| SRR2967015 | Control (root) | 195.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.911 |
| SRR9715740 | Leaf | 28.722 |
| SRR9715741 | Leaf | 32.638 |
| SRR9715739 | Root | 85.728 |
| SRR9715742 | Root | 170.812 |
| SRR9715743 | Root | 164.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.143 |
| SRR8749028 | MeJA induced 9h | 32.516 |
| SRR8749029 | MeJA induced 9h | 16.596 |
| SRR8749030 | Uninduced | 22.011 |
| SRR8749031 | Uninduced | 14.449 |
| SRR8749032 | Uninduced | 14.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 203.048 |
| SRR8400027 | Control - Root | 199.085 |