Gene detail

Gene detail information of Glyur000002s00000343.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25350.1	0	glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative
NR	KHN11406.1	0	Glutamine--tRNA ligase [Glycine soja]
COG	YP_004339565.1	6.00E-166	glutaminyl-tRNA synthetase [Hippea maritima DSM 10411]
Swissprot	tr\|P52780\|SYQ_LUPLU	0	Glutamine--tRNA ligase
trEMBL	tr\|I1LEV4\|I1LEV4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G41920.1}

Sequence

Transcript Sequence

>Glyur000002s00000343.1
CTTGTTCGACACAAAAAAAAAAGGAGCTGAGCATGTTGACAAAAACATTTTTGTTCTAAACAAAAAAATCAATAACGCTCGCTGATTCTTACACTGTATAACATTTGCGTTGTCACTGACAGTCACAGGTAAAACCCTAAATTCCATCATCAAAGCTTCAATCGGAAATTCGGAGTCCGTTAGAAGATGCCGCCGGCGAAGGACGACAGCTCCGAGAAGGAGAAGTGTCTGGATCTCTTTCTAAAGATAGGCTTAGACGAGCGCACAGCTCGAAACACCATCGCCAACAACAAAGTCACCGCCAATCTCACTTCCGTCATCCACGAGGCGGGTGTNACCGATGGGTGCAGCCGAACGGTTGGAAACCTTCTCTACACGGTTGCAACTAAGTACCCGGGAAATGCCTTGCCGCATCGCCCAACATTGCTGCAATACGTTGTTTCCTCGAAGGTGAAAACAACAGCGCAGTTAGATGCAGCTCTATCTTTTCTTGCCGCCACGGGTTCGGAGAATCTCGATTTGAATAAGTTTGAAGAAGCTTGTGGTGTTGGTGTTGAGGTTTCAACAGAAGATATCAAACATACTGTTAATGAAGTTGTTGAGGAGAACAAGGCTTCAATTTTGGAACTACGCTATCGAACGAATGTGGGTGAGTTACTTGGGCACATGCGGAAGAGGCTCCCATGGGCTGATGCAAAAGTTGTCAAGCAACTTGTTGATGCAAAATTATATGAGCTACTTGGCGATAGGACAGCAGCAGATGATGAAAAGCCTTCTAGAAAGAAGAAGGAGAAACCTGCTAAAGTAGAGGATAAGGCAGCACCTGTTGCTACCCCTGAAAAGGCATCTGAAGAAGATCTTAATCCATTTTTGATATTCCCTAATCCAGAGGAAAACTTGAAGGTGCATACTGAAATTCCTTTTAGCGATGGTACTATTCTTAGATGCTGCAATACAAAGGCGCTTCTCGACAAACACTTGAAAGCAACAGGTGGGAAAGTTTTGACCCGATTTCCACCTGAACCAAATGGATATTTGCATATTGGTCATGCCAAGGCAATGTTTATTGATTTTGGGTTGGCAAAAGACAGAGATGGAGGCTGCTACCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAATATATTGATCACATTGAAGAAATTGTCCAGTGGATCGGCTGGAAACCATTCAAGATTACTTACACAAGTGATTATTTCCAAGAATTATATGAATTAGCTGTGGAGCTCATAAGAAGGGGTCATGCTTATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAATTGAACAGTCCTTGGAGAGAAAGACCAATTTCAGAATCGTTGAAACTTTTTGAGGATATGAGACGTGGTCTAATAGAAGAAGGAAAAGCCACACTTCGAATGAAGCAAGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCATATCGAATTAAGTTTACTCCACACCCTCATGCCGGAGACAAATGGTGCATCTATCCAAGTTATGATTATGCTCACTGCATTGTGGATTCTCTTGAGAATGTCACACATTCACTGTGTACACTTGAGTTTGAGACACGCCGAGCATCATACTATTGGTTGCTACATGCATTAGGCATTTACCAACCTTATGTATGGGAATATTCAAGGTTGAATATCTCTAACACAGTTATGTCGAAGCGCAAGCTAAATCGTCTAGTTACTGAGAAGTGGGTTGATGGGTGGGATGATCCTCGCCTGATGACTTTAGCTGGTTTGCGGCGTAGAGGCATAACTTCAACAGCNATCAATTCTTTTGTCCGAGGAATTGGAATCACTAGAAGTGATGGCACTTTGATATCTGTGGAACGGCTTGAATATCACGTTAGAGAAGAATTGAACAAAACAGCTCCTCGTGCAATGGTTGTCCTACATCCACTCAAGGTTGTTATTACTAATCTTGAAGCCAACACAGCAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATCCATCTGGTTTCTACAAGGTTCCATTTTCCAATGTTGTGTATATTGAACGTTNGGATTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCGGGAAAATCTGTGATACTCAGATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGGGCCGAGTATGATCCTTCAAAGAAGACAAAGCCTAAGGGTGTTCTCCACTGGGTTGCACAACCTTCTCCTGGAGTTGATCCATTCAAGGTCGAAGTCAGGCTGTTTGACAGGCTATTCCTATCAGAGAATCCTGCTGAACTTGACAATTGGCTTGGCGATCTAAACCCTCATTCCAAAGTGCTAATTCCAAATGCATGTGGTGTGTCCTCACTCCGGGATGCAAAANTTGGGGACAATTTCCAGTTTGAAAGATTAGGCTATTTTGTGGTCGACCAGGACTCTACTCCAGAAAATCTTGTCTTTAATAGGACTGTCACCTTAAAGGACAGCTACAGTAAGGGTGGAAAGTAGGATTCATGAATTGGAACTAGAAGTTTAATCAGGGTGGCACGGGACAGATCGGCAGGCAATCGTTCAAATAGTTATAATTTATCGCAATTGTTTTGGAAAAAAAGAAAAGGGGGGGGGGGGGGGATGTACACACAGTTACCGGTCACATTCTTCAAGAGACGAATCAAAAGTTCCCGTTATTGAAATTACCTCTGGTGTGGTTTTGTAGCTTGAAGGTTATAGTTTAAACAAGATGAAGTAATACCAACATTGCTGTTATTCTCATACCACTTTTGTTGTGTAAAAGTTGCAACATTTCAATCCTAATATTTTACACATTTAATTGAAAACTAAGCCAAGTTTTTTGCACTATATTCATGTTACAGGTTAAATGTCATTCTGTTATAAACAGTTATGTGTATATCAATTTGATTACAAATTTCATATTTTTTTTATAAGCACAAATTTCAGATGTTTGATTCGGCTTATTTTGTCTGTATAAATGAAATATTGATATACAAGTATAATCGTGATATTCAAGTTGAATTGAATACATCCATAGTCGTTAGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	822221	829206	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01886	QARS, glnS	EC:6.1.1.18	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006412 translation

GO:0006418 tRNA aminoacylation for protein translation

GO:0006425 glutaminyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004819 glutamine-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000343.1	PF04558.10	tRNA_synt_1c_R1	10	171	1.00E-57
Glyur000002s00000343.1	PF04557.10	tRNA_synt_1c_R2	173	239	2.20E-05
Glyur000002s00000343.1	PF00749.16	tRNA-synt_1c	271	576	3.70E-118
Glyur000002s00000343.1	PF03950.13	tRNA-synt_1c_C	579	770	8.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.270
SRR1783600	control	29.376
SRR1783602	moderate drought stress	23.166
SRR1811619	moderate drought stress	23.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.237
DRR006520	Root Summer glycyrrhizin high producing strain	40.061
DRR006521	Root Winter glycyrrhizin high producing strain	26.532
DRR006522	Root Winter glycyrrhizin high producing strain	25.681
DRR006523	Root Summer glycyrrhizin low producing strain	40.595
DRR006524	Root Summer glycyrrhizin low producing strain	40.391
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.475
SRR2868004	Drought Stress (root)	49.377
SRR2967015	Control (root)	46.867

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.002
SRR9715740	Leaf	32.236
SRR9715741	Leaf	31.243
SRR9715739	Root	4.366
SRR9715742	Root	32.124
SRR9715743	Root	26.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.866
SRR8749028	MeJA induced 9h	43.784
SRR8749029	MeJA induced 9h	31.122
SRR8749030	Uninduced	15.004
SRR8749031	Uninduced	10.744
SRR8749032	Uninduced	10.802

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.188
SRR8400027	Control - Root	38.546