Gene detail

Gene detail information of Glyur000002s00000339

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68290.1	1.00E-106	endonuclease 2
NR	XP_003555908.1	0	PREDICTED: endonuclease 2-like [Glycine max]
Swissprot	tr\|Q9C9G4\|ENDO2_ARATH	6.00E-133	Endonuclease 2 (Precursor)
trEMBL	tr\|I1NFK4\|I1NFK4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G25090.1}

Sequence

Transcript Sequence

>Glyur000002s00000339.1
ATGGAGTATTACAGAATCCAGATAGTGGNGATGGCCTCATTGATGTTTGTGTTCCCAAACACACAAGGGTGGGGAGAAGATGGGCATGCCATAATTTGTAGGATCGCTCAGGTNACTAATGCTGCAGAAGCTGTGAGAAATTTGCTGCCAGAATATGCAGAGAATGACTTGGGGAGTGTGTGTTCATGGGCTGATCATGTCAGGTTTTATTTACACTGGTCTGCTCCTTTGCACTTTGCTGATACACCTGACTCTCTTTGCAATTACCACTACGACAGGGATTGCAAGGATCAGAATGGAGAGAAAGGAAGATGTGTTGTGGGAGCAATTAACAATTACACCAACCAGCTTCTCAGTTATGGGAAAGACACTTCATATAACCTCACACAAGCGCTTCTATTCCTTTCTCATTTTATGGGGGATGTCCATCAGCCTCTACATGTGGGTTTTACCTCAGACAGGGGAGCCAATTTAATAAATGTTCACTGGTACACATTGAAGCAAAATCTACACCATATTTGGGATGTTAACATAATTGAGACAGCAGAAGAAAGATTCTATGGCTCCAACATGGATGACTTCGTCAATGCCATTCAAGAGAATATTACGAAAACATGGTCCGATCAAGTAAAAGGATGGGAAACCTGCAGTTCTAACGAGACCACTTGCCCAAATATATATGCATCTGAAGGAATTCAGGCAGCATGTCAATGGGCATATAAAGGTGCCCCTGAAGGTTCAGTACTAGAAGATGATTACTTCCTATCACGTTTGCCAATAGTCAATTTGCGATTAGCTCAAGGAGGGGTTCGATTGGCTGCAACCCTCAATCGTATTTTTGGCTGATGCAACATGTTCTGATGTAATTTGTTGAAATACGAAATATGAAATTCGTTGCACTACATATTAAAAGAGAATAAAGTTTCTGCATTATTCTGTGTAGGCTACCTATCTTATATAGTTTCCCAACTTAATATGCTGTTATGGTCACACCTGAGAATGCTTGTGGCAAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	804985	806976	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006308 DNA catabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000339.1	PF02265.11	S1-P1_nuclease	24	280	1.30E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.480
SRR1783600	control	2.503
SRR1783602	moderate drought stress	2.104
SRR1811619	moderate drought stress	2.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.926
DRR006520	Root Summer glycyrrhizin high producing strain	6.727
DRR006521	Root Winter glycyrrhizin high producing strain	2.558
DRR006522	Root Winter glycyrrhizin high producing strain	1.832
DRR006523	Root Summer glycyrrhizin low producing strain	8.197
DRR006524	Root Summer glycyrrhizin low producing strain	8.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.541
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.617

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.515
SRR2868004	Drought Stress (root)	5.106
SRR2967015	Control (root)	6.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.742
SRR9715740	Leaf	0.334
SRR9715741	Leaf	0.320
SRR9715739	Root	1.174
SRR9715742	Root	4.980
SRR9715743	Root	4.763

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.259
SRR8749028	MeJA induced 9h	2.013
SRR8749029	MeJA induced 9h	0.212
SRR8749030	Uninduced	3.355
SRR8749031	Uninduced	0.235
SRR8749032	Uninduced	1.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.866
SRR8400027	Control - Root	20.747