Gene detail information of Glyur000002s00000336 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68450.1 | 8.00E-12 | VQ motif-containing protein |
| NR | XP_006589686.1 | 3.21E-73 | PREDICTED: protein MKS1-like [Glycine max] |
| Swissprot | tr|Q8LGD5|MKS1_ARATH | 4.00E-10 | Protein MKS1 |
| trEMBL | tr|K7LLR8|K7LLR8_SOYBN | 1.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G41970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 791592 | 792269 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000336.1 | PF05678.9 | VQ | 69 | 92 | 2.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.635 |
| SRR1783600 | control | 2.516 |
| SRR1783602 | moderate drought stress | 3.854 |
| SRR1811619 | moderate drought stress | 3.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.962 |
| SRR2868004 | Drought Stress (root) | 83.774 |
| SRR2967015 | Control (root) | 75.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.316 |
| SRR9715740 | Leaf | 0.746 |
| SRR9715741 | Leaf | 5.679 |
| SRR9715739 | Root | 2.179 |
| SRR9715742 | Root | 3.844 |
| SRR9715743 | Root | 1.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 95.423 |
| SRR8749028 | MeJA induced 9h | 172.070 |
| SRR8749029 | MeJA induced 9h | 114.287 |
| SRR8749030 | Uninduced | 466.466 |
| SRR8749031 | Uninduced | 616.886 |
| SRR8749032 | Uninduced | 361.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.452 |
| SRR8400027 | Control - Root | 13.909 |