Gene detail

Gene detail information of Glyur000002s00000323

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25920.1	8.00E-80	ribosomal protein L15
NR	XP_004497089.1	4.28E-143	PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Cicer arietinum]
COG	YP_007169485.1	2.00E-38	50S ribosomal protein L15 [Halothece sp. PCC 7418]
Swissprot	tr\|P31165\|RK15_PEA	5.00E-140	50S ribosomal protein L15, chloroplastic (Precursor; Fragment)
trEMBL	tr\|I3T8T7\|I3T8T7_MEDTR	4.00E-138	Uncharacterized protein {ECO:0000313\|EMBL:AFK48929.1}

Sequence

Transcript Sequence

>Glyur000002s00000323.1
GGGGGGGGGTGGGGAGAGGGGTTTATCATATTATCCGTTTGTGTTCTTTTGACACACGGAAGAACGGAGAGAGAGAGAGAGAGAGAGACATGGGTGCTGCTTCTCTGATTATTCCTGTGTCGTCGTGGTTACCGTCTCTGGCTTCTCCTTTCAAGGGAACCGTTAAAACCTTGGAGGCAGCAAGACCATGTGTGAAGATTCAGCGAACAAGGGGCCGTGTTTTNGTCGTCAACAAGGTTGCTCCTGCTCCTGNTCCCGTGAGCGTGAGTGAAGGNGGTGAGAGNGTTCGGTTTCGGCTGGACAATTTGGGGCCACAACCGGGTTCGAGGAAGAAGGGGAAGAGAAAGGGGAGAGGGATATCAGCAGGGCAAGGAGCAAGTTGTGGTTTTGGGATGAGGGGTCAGAAGTCTCGGTCTGGACCTGGCGTCATGAAGGGTTTCGAAGGTGGCCAGATGCCACTCTATCGACGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCGAAATATNTCCATGTAAATCTGGAGGACATCGAAAATGCTAGATTTCAGGAAGGGGAAGAGGTGTCTCTAGAGACACTGAAGGCGAAAGGTGTGATCAACCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGGTTTTGGGTGACGGAGAACTAAGCAAGAAGTTGACAATAAAAGCCCGTGCCTTTTCCACATCAGCAAAGGAGAAACTTGAGTCTGCAGGCTGTACCCTCACCGTGCTTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAACCTTGCACGTGCTGAAGAACACTTCGCCAAGAAGCGAGCTGCAACTGCTTCTGAACCAGCCTCGGCTTGAACATGAACCACCTCTGTGTCATCATCATCAGCAAAGTGATTTCTTCTTTAAGAACCACCTCACATATTTGACTGATGCTGCTGATGCAAATTCCGATCCAAATTTTGGAGTCATACGTCATTTAGGGAGAAACTACCGCTGATTATGGCATAATACGAGTTGGCAGTTGCAANGTGATAGCTGTAAATTCCTTCCAAACATAGATCTTCTGCTTCCTTTCCTTCCCCACTTTCTCATCCCCTCTCCTTTTTCCACTTTCTTTTTTCCTTTTGTTCTATCTCCTTTGAATAAAAATCTCACAAGTTGAAAAGCATGGTGCTCGACAACTATGAACTATGTTGTTTTCTTAAAATAATTTTTTTCCTTTTTCATTTTGTTGTCGTTTTCCANCTTTTGGTTGACTTTGTTTCTTACCCAAATTACGCAATTCTCTGAAAGTAGAAGACCTGGGAATTTTTCATATTTGAAATCTGTATGAAAATGGTCAACAAAATGTTTCAATTTGAGATGTTAAATCATTGTGTGCATAGTGCTTACCCCATGTCGTGAAGCATGTGCGAATAAATTATCATTATTATTGTTATTCCCTCTAAGACACGCACTTGACTTTTTTAACGAACTTGCATACGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	706259	711151	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

GO:0015934 large ribosomal subunit

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000323.1	PF00828.14	Ribosomal_L18e	94	221	4.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.195
SRR1783600	control	51.188
SRR1783602	moderate drought stress	39.992
SRR1811619	moderate drought stress	39.602

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.961
DRR006520	Root Summer glycyrrhizin high producing strain	22.104
DRR006521	Root Winter glycyrrhizin high producing strain	33.007
DRR006522	Root Winter glycyrrhizin high producing strain	32.702
DRR006523	Root Summer glycyrrhizin low producing strain	20.476
DRR006524	Root Summer glycyrrhizin low producing strain	20.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	133.901
DRR006526	Leaf Summer glycyrrhizin high producing strain	133.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.976
SRR2868004	Drought Stress (root)	20.202
SRR2967015	Control (root)	23.758

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	129.882
SRR9715740	Leaf	179.799
SRR9715741	Leaf	104.714
SRR9715739	Root	19.814
SRR9715742	Root	22.083
SRR9715743	Root	21.992

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.405
SRR8749028	MeJA induced 9h	32.215
SRR8749029	MeJA induced 9h	42.758
SRR8749030	Uninduced	23.440
SRR8749031	Uninduced	23.240
SRR8749032	Uninduced	21.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.727
SRR8400027	Control - Root	50.818