Gene detail information of Glyur000002s00000313 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08310.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004497230.1 | 0 | PREDICTED: uncharacterized protein LOC101514261 [Cicer arietinum] |
| Swissprot | tr|P0C8Q6|PP368_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial (Precursor) |
| trEMBL | tr|K7N2R1|K7N2R1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G23770.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 644220 | 646820 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000313.1 | PF01535.15 | PPR | 175 | 199 | 0.082 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 246 | 274 | 0.001 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 281 | 308 | 0.014 |
| Glyur000002s00000313.1 | PF13041.1 | PPR_2 | 315 | 357 | 5.80E-09 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 358 | 379 | 0.011 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 419 | 446 | 0.00031 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 473 | 499 | 1.10E-05 |
| Glyur000002s00000313.1 | PF13041.1 | PPR_2 | 504 | 553 | 1.80E-15 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 582 | 607 | 0.6 |
| Glyur000002s00000313.1 | PF13041.1 | PPR_2 | 609 | 657 | 8.50E-12 |
| Glyur000002s00000313.1 | PF13041.1 | PPR_2 | 679 | 728 | 4.20E-16 |
| Glyur000002s00000313.1 | PF13812.1 | PPR_3 | 754 | 784 | 0.021 |
| Glyur000002s00000313.1 | PF01535.15 | PPR | 788 | 817 | 0.031 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.554 |
| SRR1783600 | control | 5.496 |
| SRR1783602 | moderate drought stress | 5.045 |
| SRR1811619 | moderate drought stress | 5.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.349 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.686 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.555 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.846 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.873 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.031 |
| SRR2868004 | Drought Stress (root) | 5.050 |
| SRR2967015 | Control (root) | 5.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.964 |
| SRR9715740 | Leaf | 2.782 |
| SRR9715741 | Leaf | 2.901 |
| SRR9715739 | Root | 6.010 |
| SRR9715742 | Root | 14.215 |
| SRR9715743 | Root | 11.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.473 |
| SRR8749028 | MeJA induced 9h | 3.935 |
| SRR8749029 | MeJA induced 9h | 2.655 |
| SRR8749030 | Uninduced | 0.970 |
| SRR8749031 | Uninduced | 0.629 |
| SRR8749032 | Uninduced | 0.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.759 |
| SRR8400027 | Control - Root | 8.871 |