Gene detail

Gene detail information of Glyur000002s00000299

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13340.1	1.00E-55	Regulator of Vps4 activity in the MVB pathway protein
NR	XP_004497106.1	3.37E-155	PREDICTED: uncharacterized protein LOC101503192 [Cicer arietinum]
trEMBL	tr\|C6TIN4\|C6TIN4_SOYBN	3.00E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU22774.1}

Sequence

Transcript Sequence

>Glyur000002s00000299.1
TAATTTTTGTACTTTTTAAAAATTTAAATTTAAATAATGATAAATTGTAACTATGTATTGTATATGTAGGCACCAAGNCCAAAATATAATTAACCCTTGGTGAAAATCCAAATTTATGGTGTATATATCGTTATAACATAAACAGGGTATGCGTTTATATTTATAATAATACTGAACGTGCGATTATAATTTACCTTTCAAGAGGACACCGTTTTTACATTTTAAGGTGGAATAAAGAAAAGGAGGTCACCGTTCAATTGTCATTTTGGTGGATCACCTTTCCATTTCTATCTTTGTTTATTTCCCTGTTTGGATTTATCAAATATAATCATTCCTTTATCCCTTACAGAAATTTTATTTCATATTAATTTTTTAGACCTTTAATCTAAATTATATAAAAATCAGTATTTATTTTGGAAAAAGAAGAAGCCTAAACCTGCATATATTGTGGAAATGTTAATACTTAATACTGAGTATATAATCTCATTATGGCACTCATTAATGCATAATATAATATAAATACAAACAAAAATATAATCCTCAACTTTTCTGAGAAGGTAGCAAATGAGAGGAAGTCCCATTCCATTTTAGTTTCCTTGGGAGGTTCATTGTTTCACACTTCACACGGCAACCGCGTATAATATGGCTGGCTGTTTTGATGATCGCAACCATGTGTCGCTATTAGAGATGGAGTCTTCGCTCATAAGAAAACGGATGGAATAACAAAAACCAATTATATATAATTTACCTTCTGATGTGTGTGGGAGTGTGGGTTCTTTGTTCTGCTCTTAAGAAGTCTTATCCTTCTTGCTTGCTGATTGATACTTGATNGGCAGTATCCAAACAGTGCAGTTAAGTTACGTTAGGTGCATACATATATCATATGGGTAAGAAGCTAGATGCACTGCTGGGTAGAAACTTCAAGACAGAAGTTCAAGCCTACCGTTAACCTTGCCATCTCTCGCCTCGCTGTCCTCAAGATCCAGCGCCACGCTCGTCTCAAACAAGCCCGTTCTGATGTTCTTCAACTTCTCCAACTTGGTCACCACCAACGAGCTCTCCTTCGAGTTGAGCAAGTGATCAAGGAGCAGAATATGTTGGATGTGTATGATGAGATTGAAGGATACTGCAACCTCTTGATTGAAAGGGTCNACCTCATTGCACAAGAAAGGTTGGTCAATTTGGATGCTTGTTGTTATAGAGAATGTCCCGAGGAACTAAAAGAGGCAGCATCGGGAGTACTCTANGCGGCATCGAGGTGTGGAGATTTTCCGGAGATTCAAGAGATTCGCGCAATTCTGACCTCTAGATTTGGGAAAGAGTTCGCTTCCCGTGCTATCGAGTTAAGGAATAACTGTAGAGTCCATCCTAAGATGATCCAAAAGCTGTCAACGAGGATGCCGAGCTTAGAAACCAGAATGAAGGTACTAAAAGAAATTGCTTCTCAGAACAGCATCAGTCTGCAGCTTGAAGAAGTTTCTTCTGTCATAGATGAGGAACAAGTAATAAACATGGAAAAGCAAAACCAGCACAAGTCTCAGATAAGGGAAGAAGAGAATCCCCACATTTTGCCTAATAGAGGAAAAAATGATGATGATGATGATGAGTTGTCTGATTCCTTCAAGGGAAGGAAAAAGTATAAGGACGTAGCTGATGCAGCACAAGCAGCATTTGAGTCAGCAGCAAATGCAGCTGCTGCTGCAAGAGCAGCTGTGGAACTCTCACGATTCCAATCACATGATCCTGATGACCATAACAGTTCAAGCCCCCAACCAAGAAAAGTATTGGATGGACATGATTCTGTGAAGGCCATAGTCCTCACTGAAAATAAAGGGGAAAAATTTAACAAGAATGAGGAAGAGTTGGAGAACCCAAAAGACATTTGTGGTTCAAATTCAGCTGAAGAGGTCTTAAAGGGAGCCACTGTATCAGTTGATGCAGAAATTGAGGCTGATCCTTTTGTAAAGGAACAGGTTTCTTATGAGAGTGAAAACAAGAGTGATGATGAAAAGAAGAGTATTCAATCACCTAAGCAGAGTGAATCAGGAGGAGTACTAAATGAAGTGTTGGGATCCAAGGTGCAGAGTTCACCTTTTGAGGATTTGGAGAAGAGGCCATTTTCAGTGAGGACTAGACGGCTACATGGTTACTGAGTGAGGATGAGTGTATGTAATGTAGCATGTGAATTGAATGTGCATTTCAGACTAGAGTTTTGCAAGGAGATAAAGGCTAAGCGTGTAATTGCCTGAATAATTAATTTTTCTTTCATGAATTTCCCAAATATTTATGTTTTACTTCAGATTTCGGGTATCCAAAAAATTAATTTACTCAGTTGGGGGTAACAACTTCAAGGATTGGTGTCATTCAACAAGGAGATTGGGAAGTTATGGCAGGTCCTATGGTTTGCAGCAGTATGGAGCATTTGGTTAAGCAGAAATGATATAATTTTTAAAAATCATAGAGCTACAGTNACACAATTCACAGAACAAGTTAAGATCCGGGCCTGGTCGTGGCTACATGGGAAGGCAAAGGGCTTTGTCTACCCACTGGTAAACTGGCTGCAGAACCCCCTCTCTTGTTTGGGGATAAGATGAGCCTATGCAGCAGCAAATTCGTATTTGTTATTCTCGACTTCACACCGGGGNGTAAACTGGCTGCAGAACCCCCTCTCTTGTTTGGGGATAAGATGAGCCTATGCAGCAGCAAATTCGTATTTGTTATTCTCGACTTCACACCGGGGGTGTCACATTTTTCACAGCTGTGGACTTCTCTGGATTCTTCTATGTATCTTTCCATTTGGTCTGACAATCTCACGTATGGGGTGGGAATCTCTCCACAACTGTGATCTGCTCTGGATTATATTTGCATTTGGGTCTAACGGTATCATACCGGGGGTGTTACTTTTCTCACAGTTGTGGACTGCTCTGGTTGCTCTCCGCATTTTCACATTTGGGTCTGACGATGTCACGTCCGGGATGGGAATTTATTCACGGCTGTGAGGGGATCTGGAATATATTTGCATTTGGGTCTGACGTTATCACACCGGGGATGTGAATTTTTTCACAGCTGTTTCTGCTAAGGTATCTACTCTGCATTTTGGTCTGACTATTTCACGGCTGGGGTGGGAATTGCGCCACAACTGTGAACTGATCTGGATAGTTCGATGTAATCTCGCACTGGGTTGTTCGCTCTCACACCGCGGGTGGGGTTTCCACCACAAGTGTGAATGGCTCTGACATTCATTGGCGTAGAATTCAAAGGCTGGGGGTGTTTTTTTTTTTTTTTTCAGTTGTCCATAGGTTCTAACGTGCTGCAAATGATAGATAGGGTCTGGGGTGTCAACTTAGTTGGGATGTCTTTTTCTGTAGTGATGCTTTTGCACGCTAGCTTTTTGTATTAACGGTAGGAACTCAGTCGTTTTTGTACTGACAACATTGATGTTCCTTCATGTAACTAAATCTGGACATACCTTGTGCTCTGGTTTAGCTGCTTTCTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	520282	524314	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000299.1	PF03398.9	Ist1	14	187	6.60E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.865
SRR1783600	control	3.935
SRR1783602	moderate drought stress	2.608
SRR1811619	moderate drought stress	2.550

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.526
DRR006520	Root Summer glycyrrhizin high producing strain	9.410
DRR006521	Root Winter glycyrrhizin high producing strain	8.053
DRR006522	Root Winter glycyrrhizin high producing strain	7.917
DRR006523	Root Summer glycyrrhizin low producing strain	31.819
DRR006524	Root Summer glycyrrhizin low producing strain	32.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.996
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.980

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.484
SRR2868004	Drought Stress (root)	1.853
SRR2967015	Control (root)	2.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.170
SRR9715740	Leaf	24.956
SRR9715741	Leaf	27.692
SRR9715739	Root	19.029
SRR9715742	Root	41.196
SRR9715743	Root	36.840

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.637
SRR8749028	MeJA induced 9h	47.480
SRR8749029	MeJA induced 9h	48.205
SRR8749030	Uninduced	58.528
SRR8749031	Uninduced	55.815
SRR8749032	Uninduced	42.308

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.095
SRR8400027	Control - Root	5.929