Gene detail

Gene detail information of Glyur000002s00000295

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25480.1	6.00E-176	Aluminium activated malate transporter family protein
NR	XP_004497108.1	0	PREDICTED: aluminum-activated malate transporter 4-like [Cicer arietinum]
COG	YP_861569.1	5.00E-07	hypothetical protein GFO_1528 [Gramella forsetii KT0803]
Swissprot	tr\|Q9C6L8\|ALMT4_ARATH	0	Aluminum-activated malate transporter 4
trEMBL	tr\|A0A072VS31\|A0A072VS31_MEDTR	0	Aluminum activated malate transporter family protein {ECO:0000313\|EMBL:KEH44248.1}

Sequence

Transcript Sequence

>Glyur000002s00000295.1
ATGGGAACGAGAGTGGGGTCATTCAGGCACAGTTTCCTAGAGAAGAGCAGAGAGAGGCTCCTCTCTAAGAAGGAATACGCAGAATTCGGACTCAACAGCATCGTTGAAGACAATGACGNCACCGCCAACCGTTGCACGCTAGACGCGCTTTCCGAACGCGTGGCCAGCCTCCGTAACGGCTTNCGAGAGTTCTCCGCCAAACTCTACGCGATGGGTCGCTCCGATCGACGCAAAGTGGTGTTCGCCATGAAAGTTGGCTTATCTTTGGCTCTCGTTTCGCTTTTCATATACGTCGAGGAGGAACAGCTCAGCAAGTATTCTATCTGGGCAATCCTCACTGTTGTCGTCGTTTTCGAATTCAGCATTGGTGCAACACTTAACAAAGGATTCAATCGTGCTTTGGGAACAATTTCTGCTGGAGTGCTTGCCCTGGGGATTGCACGATTATCCTTGTTGGTTGGTGGAACTTTTGAGGAACTTGTTATTGTGGTATCTATTTTTATTGCAGGTTTTTGTGCAAGCTTTGTGAAGCTATATCCTGTGATGAAGCAGTATGAATATGGCTTTCGTGTGTTCTTGTTAACATTTTGTATTGTGTTGGTGTCTGGGAGACACGGGATGAAGTTTTTCACCACGGCTTTTTACAGATTGGTTCTTATTGGTGTTGGTGCTGGTATAAGTTTGACTGTGAATATTTGCATTTACCCCATCTGGTCTGGGGAGGATCTTCACAAATTGGTTGTAAAAAACTTCCATGGAGTTGCTGCATCTCTAGAAGGTTGTGTAAATGGGTACCTACAATGTGTTGAATATGAGAGGGTCCCATCCAAAATTCTTGTTTATCAAGCCTCTGATGACCCTCTTTACAGTGGTTATAGAACAGCAGTGCAATCATCAAGCCAAGAGGAGACTTTGCTAGATTTTGCATTATGGGAGCCACCTCATGGTCCTTACAAGATGTTCAATTATCCTTGGAGAAGCTACGTCAAACTTAGTGGAGCATTGAGGCATTGTGCTTTCATGGTCATGGCAATGCATGGATGCATCCTTTCAGAAATACAGGCACCTCCTGAAAAGAGGCTGGTTTTCTTTGAAGAACTTCAGAAGGTGGGTGTTGAAGGAGCCAAATTATTACGTCAACTTGGAAGCAAAGTGGAAAAGATGGAAAAGTTGAGCACTGGTGACATTCTGTTAGAAGTTCATGAGGCAGCTGAGCAATTGCAGTTGAAGATTGACAAACAGTCATTCTTGCTAGTCAATTCTGAGAGCTGGGAAGCTACAAGACATAAACAACAACAATATAAGGAAAATGAACAATCTGACAATTTGATTGATGTTAAAGACAGTGAGAACAAACAGTCGGCGATCGCTTCCCTCGGCGAACCGGTGGATGATTCAAAACTTAACATAAGAATAGATCCTTCCATGCCAGAATCAAGTTTTCCACATACCATGAGCAAGAGCTTAGTGTCATGGCCTCATCTATCTTTTTACACAGATGCCATACTAAATGAGGCAGAATCTAGAGTATATGAAAGTGCCAGCTCCTTGTCCTTGGCAACATTTGCTTCACTCTTAATTGAGTTTGTTGCAAGGCTTCAAAATCTTGTGGATGAATTCCAAGATCTTAGTGAGAAGGCAAATTTTAAAGATCCGTTTGACCAACCAATAGTGCAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	512583	515598	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015743 malate transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000295.1	PF11744.3	ALMT	70	544	3.00E-159

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.316
SRR1783600	control	0.327
SRR1783602	moderate drought stress	0.275
SRR1811619	moderate drought stress	0.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.071
DRR006520	Root Summer glycyrrhizin high producing strain	2.048
DRR006521	Root Winter glycyrrhizin high producing strain	1.504
DRR006522	Root Winter glycyrrhizin high producing strain	1.521
DRR006523	Root Summer glycyrrhizin low producing strain	7.305
DRR006524	Root Summer glycyrrhizin low producing strain	7.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.055

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.854
SRR2868004	Drought Stress (root)	11.453
SRR2967015	Control (root)	8.078

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.625
SRR9715740	Leaf	0.267
SRR9715741	Leaf	0.741
SRR9715739	Root	0.741
SRR9715742	Root	1.508
SRR9715743	Root	1.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.865
SRR8749028	MeJA induced 9h	4.434
SRR8749029	MeJA induced 9h	3.632
SRR8749030	Uninduced	4.971
SRR8749031	Uninduced	6.615
SRR8749032	Uninduced	3.886

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.592
SRR8400027	Control - Root	5.168