Gene detail

Gene detail information of Glyur000002s00000292

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68620.1	1.00E-87	alpha/beta-Hydrolases superfamily protein
NR	XP_007142891.1	0	hypothetical protein PHAVU_007G025700g [Phaseolus vulgaris]
COG	YP_004687358.1	2.00E-24	esterase/lipase [Cupriavidus necator N-1]
Swissprot	tr\|Q9LFR7\|CXE17_ARATH	9.00E-114	Probable carboxylesterase 17
trEMBL	tr\|V7BBA8\|V7BBA8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14885.1}

Sequence

Transcript Sequence

>Glyur000002s00000292.1
ATGGCTACTNTCACCTCAACCATAAGCCTTGGCCCACAATACACTGGTAAAGACTACCAACACCATGGTTCTGTGGTTGAAGAGATTAAAGGGCTTATTAGAGTACACAAAGATGGGTATGTGGAACGACCCCAGATTGTTCCATGTGTCACTGCTGATTCGATGAGTCCAGAACTGAATGTAACCTCGAGAGACATGGTCATTGACAGTGTCACAAACACTTGGGCTCGTTTCTATGTACCCATTTGCAAAAAGAAGCTACCTTTGATGGTATATTTTCATGGGGGTGGCTTCTGTGTTGGCTCTGCGGCTTGGAGTTGCTACCATGATTTCCTTGCTAAGCTATCTGCCAAAGTTGGGTGCTTGATTATGTCAGTGAACTATCGATTGGCCCCAGAGAACCCTCTCCCAGCACCCTATGATGATGGATTAAAGGCCCTAATGTGGGTGAAAAAACAACAACAACAACAATTGCTATATCATAATCAAAACGAGGCCAGTGAATTTTGGACTAGAAAATGCAATTTTTCTAGTGTCTTCTTAGCAGGGGATAGTGCAGGTGCTAACATAGCCTACAACGTTGTAGCTGCATGTGAAGGTGGTGCTGTTTCTTTAAGGCCTTTGAATTTGAAGGGTCTAATTTTGATACAACCCTTTTTTGGCGGAGAAGACAGAACGGTATCAGAGGTATGCATGGCACAATCACCGGGTTCTGCTTTGAATTTGGCAGCTTCTGATACTTATTGGCGCTTGGCGTTACCATGTGGTGCGGACCGTGACCATCCATGGTGCAATCCTTTGGTGGAATTGGAGGAATTGAAGAAGGTGTTGTTGTTGCCTACTTTGGTGTGCATCTCAGAGATGGACATATTGAAGGACAGGAACTTGGAGTTTTGTGATGCTTTGGTGAGAGCAGGGAAAAGAGNGGAGTGTGCGGTGTTCAAAGGTGTTGGGCATGCGTTTCAGATTCTGAGTAAATCTCAGCTATCAAAGAACAGAGCCCTTGAAATGATGGCTCGTGTCAAGTCCTTCATGGATCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	496344	497387	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000292.1	PF07859.8	Abhydrolase_3	90	322	3.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.105
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.146
SRR1811619	moderate drought stress	0.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.330
DRR006520	Root Summer glycyrrhizin high producing strain	6.381
DRR006521	Root Winter glycyrrhizin high producing strain	0.107
DRR006522	Root Winter glycyrrhizin high producing strain	0.104
DRR006523	Root Summer glycyrrhizin low producing strain	1.164
DRR006524	Root Summer glycyrrhizin low producing strain	1.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.094
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.058

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.492
SRR2868004	Drought Stress (root)	21.008
SRR2967015	Control (root)	24.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	128.157
SRR9715740	Leaf	26.256
SRR9715741	Leaf	165.795
SRR9715739	Root	5.762
SRR9715742	Root	46.518
SRR9715743	Root	43.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	446.246
SRR8749028	MeJA induced 9h	631.054
SRR8749029	MeJA induced 9h	260.125
SRR8749030	Uninduced	93.486
SRR8749031	Uninduced	178.967
SRR8749032	Uninduced	167.284

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.320
SRR8400027	Control - Root	7.091