Gene detail information of Glyur000002s00000289 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G25500.2 | 0 | Plasma-membrane choline transporter family protein |
| NR | XP_004497115.1 | 0 | PREDICTED: CTL-like protein DDB_G0274487-like [Cicer arietinum] |
| trEMBL | tr|I1NFG6|I1NFG6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 480188 | 484307 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000289.1 | PF04515.7 | Choline_transpo | 158 | 471 | 7.80E-73 |
| Glyur000002s00000289.2 | PF04515.7 | Choline_transpo | 158 | 460 | 2.90E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.484 |
| SRR1783600 | control | 6.496 |
| SRR1783602 | moderate drought stress | 7.449 |
| SRR1811619 | moderate drought stress | 7.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.515 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.389 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.114 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.135 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.175 |
| SRR2868004 | Drought Stress (root) | 40.734 |
| SRR2967015 | Control (root) | 29.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.715 |
| SRR9715740 | Leaf | 7.969 |
| SRR9715741 | Leaf | 10.974 |
| SRR9715739 | Root | 6.885 |
| SRR9715742 | Root | 7.956 |
| SRR9715743 | Root | 8.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.416 |
| SRR8749028 | MeJA induced 9h | 13.947 |
| SRR8749029 | MeJA induced 9h | 11.504 |
| SRR8749030 | Uninduced | 14.074 |
| SRR8749031 | Uninduced | 19.026 |
| SRR8749032 | Uninduced | 12.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.513 |
| SRR8400027 | Control - Root | 17.335 |