Gene detail

Gene detail information of Glyur000002s00000285

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25520.1	7.00E-84	Uncharacterized protein family (UPF0016)
NR	ACU16917.1	1.11E-144	unknown [Glycine max]
COG	YP_001866240.1	9.00E-43	hypothetical protein Npun_R2762 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9C6M1\|GDT14_ARATH	1.00E-104	GDT1-like protein 4
trEMBL	tr\|C6T5B5\|C6T5B5_SOYBN	4.00E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU16917.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000002s00000285.1
ATTCAATAACCAATTTTACAATTCACACGAAAGTGGCGATACACAGTAAAATTCACATTTTTCTTCCCCATTATATGCAGATTCCCAGACAGGGAATTGAATCCCATGCTCTGATCTGAAACAAAATAGTAGTACTAATTTACAGAAGAAAAAAACGCACGCACTCGCACGCGCGCACCGGGTATTTGTCTTCTCGTCAATGTTCACTCTTGACTCAAACTGGTTAAGGTAACAACTAACAATTCCCACTCAAACGGAGAGAAGAGATTAGAGAAACAAAACACACTCATTACTCTAATACTCTCTCTCTCTCTCCGATTCCTTCGTCTTCTTCGTTCAGTTCAGTCAACAACATGAGCTCAATCGTTCAGGGTTTTACCAAGTCCCTGGCCATGACCGTCCTCTCCGAGATCGGTGACAAGACTTTCTTTGCAGCTGCGATACTGGCCATGCGACACCCCCGACGCCTTGTCTTATCAGGTTGCCTATCGGCTTTGATAGTGATGACCATTCTCTCCGCTCTTGTTGGCTGGGCTGCTCCTAATCTGATCTCTCGTACATGGACTCATCACATTACGACATTCTTATTCTTGGGGTTTGGACTTTGGTCCTTGAAAGATGCAATATTTGAACAAGGGGATGCAGAGGAATTGGCTGAAGTTGAAGCTAAATTGGACAAAGATTGGAAGGCTAAAAATGGTGCTGTAAAAGATAGCAATAAGGTTGATGATGCCATGAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTCTCTCCCATATTCTTACAGGCATTTTCTATCACGTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAAAACCCATTTGGTGTGGTTCTTGGAGGGATTCTTGGGCAAACATTATGCACTTCTGCTGCTGTTATTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAGTGACTACCAGGAAGCAAATGAAAAAGAAATTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGCATCCAATCGTTCCTTTCTCCAGTCGAATCATGAAGTCTATGCCATTGGAATGGGTTCTCTCATGTAAGGATTCTCCCATTTCCATGTGCCTAGGCTACACTTAATATCTTCATCTCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	470703	474508	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000285.1	PF01169.14	UPF0016	8	83	3.60E-21
Glyur000002s00000285.1	PF01169.14	UPF0016	144	208	9.70E-19
Glyur000002s00000285.3	PF01169.14	UPF0016	8	83	1.90E-21
Glyur000002s00000285.3	PF01169.14	UPF0016	144	181	9.00E-11
Glyur000002s00000285.4	PF01169.14	UPF0016	8	83	1.90E-21
Glyur000002s00000285.4	PF01169.14	UPF0016	144	181	9.00E-11
Glyur000002s00000285.5	PF01169.14	UPF0016	8	83	1.90E-21
Glyur000002s00000285.5	PF01169.14	UPF0016	144	181	9.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.031
SRR1783600	control	41.010
SRR1783602	moderate drought stress	41.704
SRR1811619	moderate drought stress	41.604

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.757
DRR006520	Root Summer glycyrrhizin high producing strain	45.969
DRR006521	Root Winter glycyrrhizin high producing strain	23.365
DRR006522	Root Winter glycyrrhizin high producing strain	23.355
DRR006523	Root Summer glycyrrhizin low producing strain	37.691
DRR006524	Root Summer glycyrrhizin low producing strain	38.393
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.992

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	133.838
SRR2868004	Drought Stress (root)	155.215
SRR2967015	Control (root)	143.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.266
SRR9715740	Leaf	63.614
SRR9715741	Leaf	69.444
SRR9715739	Root	20.781
SRR9715742	Root	40.546
SRR9715743	Root	34.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.719
SRR8749028	MeJA induced 9h	52.087
SRR8749029	MeJA induced 9h	44.871
SRR8749030	Uninduced	42.410
SRR8749031	Uninduced	22.744
SRR8749032	Uninduced	24.085

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.972
SRR8400027	Control - Root	91.635