Gene detail information of Glyur000002s00000279 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31610.1 | 6.00E-96 | Ribosomal protein S3 family protein |
| NR | XP_007152453.1 | 1.50E-124 | hypothetical protein PHAVU_004G131800g [Phaseolus vulgaris] |
| COG | YP_007714070.1 | 9.00E-32 | SSU ribosomal protein S3e (S3p) [Candidatus Methanomethylophilus alvus Mx1201] |
| Swissprot | tr|Q9SIP7|RS31_ARATH | 1.00E-119 | 40S ribosomal protein S3-1 |
| trEMBL | tr|V7C2P9|V7C2P9_PHAVU | 6.00E-125 | Uncharacterized protein {ECO:0000313|EMBL:ESW24447.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 432841 | 434937 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000279.1 | PF07650.12 | KH_2 | 65 | 139 | 1.20E-13 |
| Glyur000002s00000279.1 | PF00189.15 | Ribosomal_S3_C | 150 | 223 | 5.00E-12 |
| Glyur000002s00000279.2 | PF07650.12 | KH_2 | 20 | 94 | 7.50E-14 |
| Glyur000002s00000279.2 | PF00189.15 | Ribosomal_S3_C | 105 | 178 | 3.10E-12 |
| Glyur000002s00000279.3 | PF07650.12 | KH_2 | 20 | 94 | 7.50E-14 |
| Glyur000002s00000279.3 | PF00189.15 | Ribosomal_S3_C | 105 | 178 | 3.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.617 |
| SRR1783600 | control | 19.422 |
| SRR1783602 | moderate drought stress | 17.624 |
| SRR1811619 | moderate drought stress | 14.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.702 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.104 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.286 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.975 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 161.963 |
| SRR2868004 | Drought Stress (root) | 113.469 |
| SRR2967015 | Control (root) | 104.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 77.904 |
| SRR9715740 | Leaf | 64.860 |
| SRR9715741 | Leaf | 60.342 |
| SRR9715739 | Root | 82.038 |
| SRR9715742 | Root | 73.955 |
| SRR9715743 | Root | 86.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 166.397 |
| SRR8749028 | MeJA induced 9h | 76.322 |
| SRR8749029 | MeJA induced 9h | 102.527 |
| SRR8749030 | Uninduced | 22.565 |
| SRR8749031 | Uninduced | 7.932 |
| SRR8749032 | Uninduced | 25.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 99.355 |
| SRR8400027 | Control - Root | 86.973 |