Gene detail

Gene detail information of Glyur000002s00000274

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04290.1	3.00E-175	kow domain-containing transcription factor 1
NR	XP_006589704.1	0	PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Glycine max]
Swissprot	tr\|Q9STN3\|SPT51_ARATH	1.00E-56	Putative transcription elongation factor SPT5 homolog 1
trEMBL	tr\|I1LEZ4\|I1LEZ4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G42360.1}

Sequence

Transcript Sequence

>Glyur000002s00000274.1
CTCTTTTCATTTCCGTATCATCGGTCTTCGCACTTCACACAACACTCGCACACTCGCTCACTTCCTCCCTCCTCTCTCTGCGTGTGCATGCAATTGGCGTTGGTCTCACCTCCCATTTTCGCCGGAAATGACGGGCAAGGGCAAGGGCAAGGGCAAAGAGGTCGACGGAAAAGCTTCTGCCGGCAAGCGAAAGAACACCTTTGACGATGACAAAACAGGAGGCCGCAAGAGAAACAATAGAGGAGTCCTTCAATTCTTCGATGACGCCGCTGTCGTTGACGAGGACGACGACGAAGACAGCGACGACATCGATTCCAGTGATGATTCTTTTGAAGACGAGGAGTTTGAGACGTTGTCAACAAGGATGAACGAGCCGCCAGCTAAGGGCCAGAGTAGCCTTCCAGTTCCCAAAGAGGAACTGGTGGATGAAGATGATTTTGTAAGAATAATGGAGGAACGCTATAGTGAAAATTCTGGATTTGTCACCTTTGCTGGAGATGAGTTTGATGGCAAACCAATCGATCCAAATTCTTTACACCCCGGTGTTAAGGAATCACTTCCAACCATCTGGAAAGTCAAATGCATTGTTGGGCGCGAGAGGCTTTCAGTTTTCTGTCTGATGCAGAAGTTTGTTGACTTGAAATCACTGGGTACTAATTTGAAGATAATATCTGCCTTTGCTGTAGAGCACATGAAAGGATTTGTATACATTGAAGCTGAAAGGCAGTGTGATATAAACGAGGCATGTCAAGGGATTTCTGGTATCTATGTTACTCGAGTGCAACCTGTTCCAAGAAGTGAAGTTCATCATCTCTTCTCTGTTCGAAGTAGAAAGCCTGAAATTTCTGAGGGTATGTGGGCTCGTATAAAAAGTGGTAATTACAAGGGGGACTTAGCACAGGTTGTGGCTGTGAATAATACGTCCAAAAAAGTTNCAGTGAAGCTTATTCCAAGAATTGATCTACAAACTCTGGCTGCCAAATTTGGTGGAGGATATAGTCGCCAAAAAACTGCTGTACCGGCACCAAGATTAATCTGCTCAAGTGAACTTGAGGAATTCCGACCTCTGATGCAAATCAGACGCGACCGTGATACTGGCAAAGTTTTTGAGGTTCTTGATGGCTTGCTGCTCAAAGATGGATATGTATACAAGAAAGTTTCTCCAGATTCATTAAGTTTATGGGGTGTTGTGCCAACTGAAGAGGAGCTATTGAAGTTTGGGTCTTCTGAAAACAATGAATCAAATGATTTGGAGTGGCTTTCTCAGCTTTATGGTGACTNAAAGAAAAAACGGGTTATAAGATCTGACAAGGGTGGTGGCAAAGGGGAGAGCTCATCAGGTTCTGGTGTGGCAAATGGTTTTGAATTATACGATCTTGTGTGTTTGGGCAAGAAGGACTTTGGTGTGATAATAGGCATGGATAAAGATGATAGCTACAGGATTCTAAAAGAGAGTCCAGAAGGACCTGTTGCCGTAACTGTTCAACGACATGAAATAAAGAGTGGGCTGTTTGATTTGAAACTTAGTGCCCAAGACCAGCACACTAAGACTATATTGGTTAATGATAATGTCAGGGTTCTGGAGGGTCCATCTAAGGGTAAACAAGGCATTGTTAAGCATATCTATCGAGGGATTGTCTTTTTTTACGATGAAAATGAGGAAGAAAATGGTGGATACGTCACAGCTAAAGCTAATATGTGTGAGAAAGTCAAGCTTACTGTTGGTGATTTCAGTGGAAAGGATAGCGAACCAGGTCCTTTGGTCTTCGATGACCAACCGTCATCACCAAGGTCCCCTCTGTCACCAAAAAAGCCATGGCAAGCAAGAGAAAACAATCGTGAATTTAACCGTGGGGACAAAGATGGCTTGTTTACNATTGGTCAGACCTTGAGAATTAGGATAGGTCCTTTGAAGGGATACCTCTGCCGAGTCATTGGCTTACGACGCTCTGATGTTACCGTGAAACTAGATTCTCAGCAGAAGGTTCTTGATGTTAAACGTGAGCACCTTTCTGAGGTTCAAGGGAAGAGTACTGCGATGTCATCAAGTGATCCAGAGTCAAGTTCATTGAAGCCATTTGATTTGCTGGGCACTGAAGGTAGCTCTGGAGGTTGGATGGANGGCGTGGGAACATCCACTGGGGGTGGTGGATGGAATGCTGGAGGAACGTCAGCTGAAAGGAGTGCGTGGTCTAATCCTTCTGCTTCAAGTTTCTTGAAGCCAGAGTCTACCTCAAATCCCTTCAGTTCTGAGGGTGCAGAAGATACTGCTTGGGAAACTAAAAATACTTCAACTGAGAAGTCCTCGTGGGGTGCTGCAGTTGACAACAATGCAATTGCTTCTGATCCAGATCAGTCTGGTGGCTGGGGGAAAAGTGGAGGCAGCTGGGGTCAGGCAGAGCTTAAAATTAGAAGTACGAGTGATGACAATCAGAATAGCAAATGGAAAAATAAAACTAATGATTNGGATGGAAATGAATCCTCTGGATGGGACAGTAAAAGCAATTGGAATACAACCAAAGCTTCTGGAGATGAGTCCTCTGGTTGGAACAGTGTCAAAATGTTAAATGAAAGTCCAGCAACTGGATGGGGCCAAGGCAATGGTTTTAAAAGTGGATCAAATGACAGTGGAAACTCAAATCCTACTTCGAGTGGTTGGAAATCTGGAACAAATGGAGCCAAAGAAGCTGGAAAGATGGCTGGTACTTCAGATTTGGATGATAATCAGGATGCTGGGTGGAAAAGTAATGATCAAGGTGGTTGGAGTGCAGGAAAAGCTTCAGATGGTTCAACTACAGGGTTGGGTCATGCCTCTAGTTGGAAGAAGGGATCAAGTGCTGNAGAAAACCTTGATTCTGCCTGGGGGTCTGGGAATGCTACTGGTTGGAAAAGTGGGTTGAGTGAGGGAGCCCAAGAAGGTTCTAATTGGGGAAAAACAGGTTCAAGCACTGTGGCTGAAAACCAGGATTCTGATCGGGGCAAAGCTGGTAATTGGAACTCAGTATCTGGAAATGCTGGTGGAAGTGAAGATAATGGTTGGGGTCAGAAAAGCAATTGGAAATCTGGATCTAGTGATTCCAATCAAACCTCAAACTGGGGTGGGAATAGCAATTGGAACTCAAATAATTCCTCTGGGAGTGACAAGAATGAAAACAAGAATTCCAACTGGAGTTCTGGGCATACTGATCCTGGAGATCAAGATTCCAATTGGGGCAAGAAAAGCAATTGGAACTCCGGAAACAGTGGAAAACCAGCTTCTGATATGAACAATAGCAATTGGAACGTGGGATCTGGTGATTCCAATCAAAATTCCAACAAGGGAAACAATGGCAATTGGAACTCTAACAAATCGTCTTGGGGTGCCGGGAATGAAAACAAGAATACCAACTGGAGTTCTTGCAATACTGATTCCCAAACTCCAGATTTGAATTGGGGAAAGAAAAGCAATTGGAATTCTGAATCTGGTGGTGGAAATCAAAACACCAATTGGAGAAGCAATTGGACGTCAGGAAATGCCTCAAGTGGTGTAGATGAAAGTCTAAATGAAACTTCTGATGACGGAGGTGGTGAGAACTGGAGGGGTGGTTACCGTGGTAGAGGTGGCTTTAGAGGTGGAGGTTTTCGGGGTAGGGGAGAACGTGGTGGCTTTGGTGGCCGAGGAGAACATGGGGGCTTTGGTGGCCGAGCAGAGCGTGGTGGCCGAGGAGAACGTGGAGGCTTTGGTGGNCGGGGTAGATCAGATAGGGAAGGTTTTGGTGGTAGATGGGGATCAGACAGAGGATATGGAGGCCGGGGCCGTGGAAGGACAGACCAACCTGGTGGTTGGAACAACAGACAGGATTCTGGCGAGGATGGATCCTCTGGCTGGAAGAAGGGGGCGGATAATGTTGAAGGATGGAAGAATAGTAGTTGGAGTCAATCAAATGCTGCAGATAAGGGTCAATCATCTAGTTGGAATGTATCAGCAGATGCAGGTTCTTGGGGCAAGAAAAATGATGGGAGTGACAAAGGTGGATGGTAATTACTTTCTAGAACGTGCTTGATGGACCAAAGAAGGAAATCGAGCTCAGGCATTTCTATTTAGTAATGGCAATCGTTATTGTAAATTCGAAAAAATCTGTCTTCTGGAACTTGACGTTTTATTGTTTTGTTTTTAAAACTTACTAATTATTCTAAACAGATCTGATGAATGACTAATCCTTTATGCTGTGTTATGTAATGAATGCTAAGAAATATGCTTCCATGAAATAGGGCGCGCAGTGGAGTGTTACTGTGTTTGTG

Protein Sequence

>Glyur000002s00000274.1
MTGKGKGKGKEVDGKASAGKRKNTFDDDKTGGRKRNNRGVLQFFDDAAVVDEDDDEDSDDIDSSDDSFEDEEFETLSTRMNEPPAKGQSSLPVPKEELVDEDDFVRIMEERYSENSGFVTFAGDEFDGKPIDPNSLHPGVKESLPTIWKVKCIVGRERLSVFCLMQKFVDLKSLGTNLKIISAFAVEHMKGFVYIEAERQCDINEACQGISGIYVTRVQPVPRSEVHHLFSVRSRKPEISEGMWARIKSGNYKGDLAQVVAVNNTSKKVXVKLIPRIDLQTLAAKFGGGYSRQKTAVPAPRLICSSELEEFRPLMQIRRDRDTGKVFEVLDGLLLKDGYVYKKVSPDSLSLWGVVPTEEELLKFGSSENNESNDLEWLSQLYGDXKKKRVIRSDKGGGKGESSSGSGVANGFELYDLVCLGKKDFGVIIGMDKDDSYRILKESPEGPVAVTVQRHEIKSGLFDLKLSAQDQHTKTILVNDNVRVLEGPSKGKQGIVKHIYRGIVFFYDENEEENGGYVTAKANMCEKVKLTVGDFSGKDSEPGPLVFDDQPSSPRSPLSPKKPWQARENNREFNRGDKDGLFTIGQTLRIRIGPLKGYLCRVIGLRRSDVTVKLDSQQKVLDVKREHLSEVQGKSTAMSSSDPESSSLKPFDLLGTEGSSGGWMXGVGTSTGGGGWNAGGTSAERSAWSNPSASSFLKPESTSNPFSSEGAEDTAWETKNTSTEKSSWGAAVDNNAIASDPDQSGGWGKSGGSWGQAELKIRSTSDDNQNSKWKNKTNDXDGNESSGWDSKSNWNTTKASGDESSGWNSVKMLNESPATGWGQGNGFKSGSNDSGNSNPTSSGWKSGTNGAKEAGKMAGTSDLDDNQDAGWKSNDQGGWSAGKASDGSTTGLGHASSWKKGSSAXENLDSAWGSGNATGWKSGLSEGAQEGSNWGKTGSSTVAENQDSDRGKAGNWNSVSGNAGGSEDNGWGQKSNWKSGSSDSNQTSNWGGNSNWNSNNSSGSDKNENKNSNWSSGHTDPGDQDSNWGKKSNWNSGNSGKPASDMNNSNWNVGSGDSNQNSNKGNNGNWNSNKSSWGAGNENKNTNWSSCNTDSQTPDLNWGKKSNWNSESGGGNQNTNWRSNWTSGNASSGVDESLNETSDDGGGENWRGGYRGRGGFRGGGFRGRGERGGFGGRGEHGGFGGRAERGGRGERGGFGGRGRSDREGFGGRWGSDRGYGGRGRGRTDQPGGWNNRQDSGEDGSSGWKKGADNVEGWKNSSWSQSNAADKGQSSSWNVSADAGSWGKKNDGSDKGGW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	416688	424426	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000274.1	PF03439.8	Spt5-NGN	147	230	9.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.355
SRR1783600	control	27.445
SRR1783602	moderate drought stress	29.369
SRR1811619	moderate drought stress	29.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.043
DRR006520	Root Summer glycyrrhizin high producing strain	30.574
DRR006521	Root Winter glycyrrhizin high producing strain	18.464
DRR006522	Root Winter glycyrrhizin high producing strain	17.928
DRR006523	Root Summer glycyrrhizin low producing strain	30.438
DRR006524	Root Summer glycyrrhizin low producing strain	30.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.285
SRR2868004	Drought Stress (root)	90.090
SRR2967015	Control (root)	99.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.066
SRR9715740	Leaf	27.391
SRR9715741	Leaf	29.591
SRR9715739	Root	5.528
SRR9715742	Root	37.193
SRR9715743	Root	33.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.030
SRR8749028	MeJA induced 9h	50.095
SRR8749029	MeJA induced 9h	33.575
SRR8749030	Uninduced	20.433
SRR8749031	Uninduced	20.777
SRR8749032	Uninduced	16.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.696
SRR8400027	Control - Root	61.970