Gene detail

Gene detail information of Glyur000002s00000261

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10600.1	3.00E-171	cationic amino acid transporter 7
NR	XP_007142869.1	0	hypothetical protein PHAVU_007G023700g [Phaseolus vulgaris]
COG	YP_002774452.1	9.00E-52	amino acid transporter [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q9LZ20\|CAAT6_ARATH	0	Cationic amino acid transporter 6, chloroplastic (Precursor)
trEMBL	tr\|V7BD87\|V7BD87_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14863.1}

Sequence

Transcript Sequence

>Glyur000002s00000261.1
ATGGGAAGCCACGCCCATGGCTCTTCATCATTCTCGAGCCTCCGCGCGTACCTCCGAGCCGTCACCCACACTCCCTCCCGGTTCGCTCGCCGGTCCGTTTCGGTCTCCACCTCCTACGAAGAGATGAGCNGGGTTCGAGCCCGCTCCGGTTCAACCATGCGCAAGACCCTCCGCTGGTTCGACCTNGTCGGCCTTGGCATCGGCGGAATGGTCGGCGCCGGCGTCTTCGTCACCACCGGTCACGCCTGCCGCCTCTACGCCGGCCCCGCCGTCGTACTCTCCTACGCCATTGCCGGCCTCTGCGCTCTCCTCTCCGCCTTCTGCTACACCGAGTTCGCCGTCGACATGCCCAGGCTTCACGGTGTACTTCGGCACCGCAATCGGAATCTCCTCCTCGAAATGGAGGCTCACAGTGCCTTCTCTTCCCGAGGGCTTCAACCAGATAGACATCGTTGCCGTCGCCGTTATTTTGCTCATCACANTCGTCATTTGCTACAGTACGAGGGAGAGTTCGGTGGTGAACATGATATTGACGGCGCTGCACATACTATTTATAGCGTTTGTGATAGTGGGTTTTGGAGAGGGAGCTGGAAGAACTTCACGGAGCCCGCTAACCCGGAGAATCCGTCGGGGTTCTTCCCGCACGGGGCTGCCGGCGTTTTCAAGGGTGCAGCGGCTGTCTACCTCAGTTACATTGGGTACGACGCCGTTTCAACAATGGCGGAAGAAGTGAAGGACCCTGTGAAAGATATCCCCGTGGGCGTGNCGGGATCGGTTATCATCGTCACTGTCCTTTATTGCCTTATGGCTGCTTCAATGTCCAAGCTTCTCCCTTACGACATGATCGATGCCGAAGCACCGTTTTCGGCGGCGTTCAGTGGGAAATCGGACGGTTGGGGATGGGTGTCTCGGGTGATAGGAGTGGGGGCCAGCTTTGGGATATTGACGTCGCTGTTGGTGGCGATGCTGGGTCAGGCTCGTTACATGTGTGTAATCGGACGCTCCAATGTGGTCCCTTCTTGGTTCGCNAAGGTCCACCCCAACACCTCCACTCCCGTCAACGCCTCCGCTTTTCTTGGGATCATCACAGCAGCAATAGCCCTTTTCACTGACCTTGATGTCCTCCTCAATCTGGTGTCCATTGGTACCCTCTTTGTTTTTTACATGGTGGCAAATGCTGTGGTCTATAGACGTTATGTGGCTACAGGGACAACCAATCCATGGCCTACATTGTCCTTCCTCTGCTCCTTTTCCTTTACCGCCATCATGTTCACCCTTATTTGGAAATTCGTACCCAATGGAAGGCCCAAAGCAGGGATGCTCAGTGTTTGTGGTGTGATTGCTGCTGCAATCTTGCAACTTTTCCATTGCATGGTCCCTCAGGCACGGAAGCCAGAGTTCTGGGGTGTCCCACTCATGCCATGGATACCCTCCATATCAATCTTTTTGAATGTGTTCTTGCTGGGATCACTTGATGGGCCATCCTATGTTCGGTTTGGATTCTTTTCTGCCGTCGCTGTTCTGTTCTATGTCTTGTACAGTGTTCATGCCAGCTTTGATGCTGAAGGGGATGGTTCTCTCGGTCAAAAGAATGGTGAAATCCACGTGGAATCAAGAGAAAGTAGTGAGGAGGACCCAAGTCTCAAAGTGTAGATAGATGGTTAGATAAAGATATAATCTTTGGTTAATTATTTATTATGTCTTTGAATTTTAATTTTAGGAGGGTGATATATTGATGACTTCNGCCTTTTAGGATGGTTGGTTGATGTTCACTTGGAACAACCGAAAAACAAGGATGTGGGGAGGGAGAATTATGTGAAATGGAGAGATATTGAATTAAATTAATAGAAAATTANAATAGGCTGCAACTTTTGTAGAATTGGCGAATTGTATAGTTAAAAGGGCTGCTTAGGTGGCGAATGGTGATCCCTTTTGTAAATTCTCTGGCTCATGTTATGTTATTATCCCCAAAGAAAAGAAAAATCTCGGTTTGTTTATCCTATNTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	337783	342031	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000261.1	PF13520.1	AA_permease_2	198	438	2.70E-28
Glyur000002s00000261.1	PF13906.1	AA_permease_C	468	518	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.070
SRR1783600	control	1.072
SRR1783602	moderate drought stress	4.745
SRR1811619	moderate drought stress	4.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.454
DRR006520	Root Summer glycyrrhizin high producing strain	2.514
DRR006521	Root Winter glycyrrhizin high producing strain	1.244
DRR006522	Root Winter glycyrrhizin high producing strain	1.165
DRR006523	Root Summer glycyrrhizin low producing strain	2.607
DRR006524	Root Summer glycyrrhizin low producing strain	2.735
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.701
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.657

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.898
SRR2868004	Drought Stress (root)	42.115
SRR2967015	Control (root)	41.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.800
SRR9715740	Leaf	2.199
SRR9715741	Leaf	1.890
SRR9715739	Root	1.027
SRR9715742	Root	3.838
SRR9715743	Root	3.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.605
SRR8749028	MeJA induced 9h	4.065
SRR8749029	MeJA induced 9h	7.894
SRR8749030	Uninduced	0.676
SRR8749031	Uninduced	1.333
SRR8749032	Uninduced	1.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.681
SRR8400027	Control - Root	6.883