Gene detail

Gene detail information of Glyur000002s00000256

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38710.2	1.00E-100	AMMECR1 family
NR	XP_004497138.1	5.88E-135	PREDICTED: uncharacterized protein At2g38710-like isoform X1 [Cicer arietinum]
COG	YP_005063422.1	1.00E-15	hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
Swissprot	tr\|Q9ZVJ2\|AMERL_ARATH	3.00E-127	Uncharacterized protein At2g38710
trEMBL	tr\|W9QNX5\|W9QNX5_9ROSA	3.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:EXB36994.1}

Sequence

Transcript Sequence

>Glyur000002s00000256.1
TTCAGATATATAAATTTTTATTATTAAGATGGACTGCAACTAAATTATTAGCAGCCCCCGTAAAGTGCACGTTGCTTGCAAGGAAGTAGGAACCCGCATAGAGCGAGGAGAGAAAAAGGAAAAGCTTCTCACTCACTCTATTTAGGGTTCACCGAACAACAAGAAGAAGGAGGAGAAGAAGAACCGAGCGGCACAGATTCAGAATTCCGATTACACGGCTCTGGAAAACTGTTCTTAGGAATTGAGTGATAAAACTAAATAGAGAACAAAAAATTAAAAAATAATACTTCGATCTTTCGTAAAATTTAAGCAAATATTAAAAAGGACAATTAGAAACGGAAAAAGGGGTAAAAATGGTGTCGGCAAACAGGGAAATGGTTGTTTACTGCTTCGACACCCTCGTTGCTCACTACAACAGCGAGGATGCTCCTCCTCCTGCCTTCGAGGAGGGTCAACACCCATTGTTTGTTACATGGAAGAAAGTGGCGAATGGTGGGGAGCCTCGTCTTCGTGGATGCATTGGTTCTCTAGAAGCACGTGGCTTGATCAATGGCTTCAGAGATTATGCGCTGAATAGCGCTCTCAGGGACCGTAGGTTTCCTCCTATACAGCCTAAAGAACTTCCTTCTTTGGAGTGTACAGTNTCTATTCTTACTGATTATGAAACTGCTAATGATTACCTTGACTGGGAGGTAGGAAAACATGGTATAATTATTGAATTTTCTGATCCTGACTATAACACCAGGCGAAGTGCCACATACCTGCCTGAAGTGGCTGCCCATGAAGGTTGGACTAAAATAGAGGCCATTGATTCTTTGATACGTAAAGCAGGCTACAATGGTACAATCACCGAGTCACTCAGGAAGCGCATCCAGCTAACCAAATACCAAAGCACCTTATTTAGCATGCATTATGGTGAGTATGTTTCCTATGTGAAACAGACAAGAGGTGAAGCTCCTTCCATTGATGGAGCTAAGTTGCGTAGCTGGTGATTTTTACGGACATCCTTTTCTAAAGCTGCCTGGCTTCGTTGGTAGAAGAAAGAATACAATTCCCAAAAGAAAAAAAAAAACTTGGTGCAATTATGTTTTCTTAACTGAACTACTGTTGCTGGTGCAGCTCTTTACATTCTTCAAATTCATTTGGTTTTGAAGAAATTATTAATACNGGACTCAGTTTCTGTGAACGTCCTTCTATCAATCAATTCAGCAGCTTAAGAAAGCTGCGGCACTGTTGAACCATTTGATGTCGGTCTTGTTGATAATTGGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	301166	305146	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000256.1	PF01871.12	AMMECR1	8	184	1.80E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.597
SRR1783600	control	17.511
SRR1783602	moderate drought stress	15.686
SRR1811619	moderate drought stress	15.343

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.705
DRR006520	Root Summer glycyrrhizin high producing strain	41.652
DRR006521	Root Winter glycyrrhizin high producing strain	14.114
DRR006522	Root Winter glycyrrhizin high producing strain	14.133
DRR006523	Root Summer glycyrrhizin low producing strain	20.545
DRR006524	Root Summer glycyrrhizin low producing strain	20.524
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	98.260
SRR2868004	Drought Stress (root)	86.676
SRR2967015	Control (root)	73.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.314
SRR9715740	Leaf	39.101
SRR9715741	Leaf	57.874
SRR9715739	Root	9.899
SRR9715742	Root	22.455
SRR9715743	Root	20.485

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.917
SRR8749028	MeJA induced 9h	14.925
SRR8749029	MeJA induced 9h	16.055
SRR8749030	Uninduced	10.148
SRR8749031	Uninduced	8.787
SRR8749032	Uninduced	8.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	90.837
SRR8400027	Control - Root	89.924