Gene detail

Gene detail information of Glyur000002s00000250.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25100.1	2.00E-113	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	XP_003536702.1	1.41E-171	PREDICTED: ribonuclease H2 subunit A isoform 1 [Glycine max]
COG	YP_685601.1	2.00E-23	ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q9SEZ6\|RNH2A_ARATH	6.00E-142	Ribonuclease H2 subunit A
trEMBL	tr\|I1LF08\|I1LF08_SOYBN	5.00E-172	Ribonuclease {ECO:0000256\|RuleBase:RU003515}

Sequence

Transcript Sequence

>Glyur000002s00000250.1
CCAGTCCAGAGTCTCTTCTAAATAAATAAAATAAATATTGTAAGCCAAACGGCTTAAACTTGCCCTAATTCCATATCACTCAGATCGGAGGCAGTGGCAGGTTCATTTGGCGGGAACGTGAAAAGCAGCTATCCAGAATGAATTCCCTCATCGAGTAGCGTAGCCGAATGAATGAATAGGCACAGATTACAGAGNGAGCCGCTGAAGGGAAGCAGCAGAAATGGGATCTGAAGCTGGGATTGTTCCAGAATGGGCATCAGAGCCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTCCTAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAATCTTTAAAAGCCAATGNTTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAGCTCTCCGCTAAGATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACACGACTCTGCCATGGGCCTCATTGATAGGGTACTCAAAATGGGAGTGCTTCTAACTGAGGTTTATATAGATACCGTTGGAGATGCAGGTAAATATGAAATGAAGCTGTCTAAAAATTTTCCCTCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCTAGCATCGTTGCAAAGGTCACAAGAGACCAAGCTTTAAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGCTCTGGATATCCTGGAGATCCCCTAACCAAGTCTTGGCTAGAACATCACAAACANTCTATCTTTGGTTTCCCTTCATTGGTACGGTTTAGTTGGGGAACCTGCACTACTTATTTTAAAGATGGTGCGGAAGTCTTATGGGAGTCTGACAAATTGGATGAAGACGGTGGCGGCAATAATAATAGTCGCAAGCGGCAATTGAAATTAAGCAATGTAGGTTTCACCACGTCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGGAAACTGGAGCACCTCACTCATTTCTAAAAATGATGCTTANTCACTGTCCCCGCTCTGTCTCTGCATTATTTCAGTAATTTATAGCTATGTGAAATTATATAATGTTAGAATATTTTCATCTTTGGAGAACATTTTGCTGTATATACGCTCTCTAGGATGAGACCCTCATACTCAGTATAACCAGATGTGTACTAGTATTGTATCAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	253085	255690	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10743	RNASEH2A	EC:3.1.26.4	DNA replication	map03030

Gene Ontology

biological_process
GO:0016070 RNA metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0004523 RNA-DNA hybrid ribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000250.1	PF01351.13	RNase_HII	29	204	4.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.519
SRR1783600	control	12.436
SRR1783602	moderate drought stress	14.385
SRR1811619	moderate drought stress	14.722

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.221
DRR006520	Root Summer glycyrrhizin high producing strain	16.110
DRR006521	Root Winter glycyrrhizin high producing strain	13.686
DRR006522	Root Winter glycyrrhizin high producing strain	14.166
DRR006523	Root Summer glycyrrhizin low producing strain	19.970
DRR006524	Root Summer glycyrrhizin low producing strain	19.794
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.530

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.310
SRR2868004	Drought Stress (root)	19.327
SRR2967015	Control (root)	21.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.083
SRR9715740	Leaf	9.336
SRR9715741	Leaf	8.012
SRR9715739	Root	5.852
SRR9715742	Root	9.271
SRR9715743	Root	9.785

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.060
SRR8749028	MeJA induced 9h	26.473
SRR8749029	MeJA induced 9h	29.967
SRR8749030	Uninduced	9.643
SRR8749031	Uninduced	5.642
SRR8749032	Uninduced	7.897

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.642
SRR8400027	Control - Root	29.671