Gene detail information of Glyur000002s00000248 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18590.1 | 8.00E-35 | Nucleic acid-binding, OB-fold-like protein |
| NR | AFK39968.1 | 1.89E-59 | unknown [Lotus japonicus] |
| Swissprot | tr|Q6NLG7|RFA3B_ARATH | 6.00E-44 | Replication protein A 14 kDa subunit B |
| trEMBL | tr|I3SI76|I3SI76_LOTJA | 7.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK39968.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 245680 | 247281 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000248.1 | PF08661.6 | Rep_fac-A_3 | 1 | 99 | 5.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.678 |
| SRR1783600 | control | 19.202 |
| SRR1783602 | moderate drought stress | 9.302 |
| SRR1811619 | moderate drought stress | 8.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.540 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.246 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.918 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.512 |
| SRR2868004 | Drought Stress (root) | 11.772 |
| SRR2967015 | Control (root) | 10.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.321 |
| SRR9715740 | Leaf | 1.985 |
| SRR9715741 | Leaf | 2.329 |
| SRR9715739 | Root | 6.833 |
| SRR9715742 | Root | 2.286 |
| SRR9715743 | Root | 5.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.360 |
| SRR8749028 | MeJA induced 9h | 12.257 |
| SRR8749029 | MeJA induced 9h | 19.190 |
| SRR8749030 | Uninduced | 2.501 |
| SRR8749031 | Uninduced | 1.729 |
| SRR8749032 | Uninduced | 1.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.325 |
| SRR8400027 | Control - Root | 18.388 |