Gene detail

Gene detail information of Glyur000002s00000246

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27510.1	3.00E-38	ferredoxin 3
NR	KEH44310.1	1.30E-153	dual specificity phosphatase domain protein [Medicago truncatula]
COG	NP_488188.1	2.00E-41	ferredoxin I [Nostoc sp. PCC 7120]
Swissprot	tr\|P27788\|FER3_MAIZE	7.00E-55	Ferredoxin-3, chloroplastic (Precursor)
trEMBL	tr\|A0A072W222\|A0A072W222_MEDTR	5.00E-154	Dual specificity phosphatase domain protein {ECO:0000313\|EMBL:KEH44310.1}

Sequence

Transcript Sequence

>Glyur000002s00000246.1
AGTACATACATACATCTACCGGATGATAGCAAAAGGGCATTTCCTCGATTTCCTTCTCTGCGGTTGTTCAGTTTTTATTCTTCCAGCACTTTCCGGCGTCGGAGAAACACTGCTCGATTTCAAAATTGTCTGCTGCCATATGTAAAGCAAAGGGAAACTCGTCGTTAATCCGAATNCAAATTCAGAAGAAAGAAGAACAAGAACAAGAAGAAGAAATGGGTGTGGGTATATCAGTGTTGATAGCACTAAAAGCAGCAACNCTATTGCTATGCTTCGCGTACCTAAGAAGCCTCGGTTTCATGCTCTTATCAATCCCTTTCCTCTACGCCTCGTTGGTGTCACTGTTGGTCTCAATAGCATCACACCCATCCATTGACCTTCCANTGCTTCTAGGGAAGAGCACCGACGGCACATTCCCCATTTTGTCCCTCATCATATTCAGCCCTTATCTCTACTTCGTTCGAGTCTTCTCCGCACTCCGAAGGCTCAGAAGCGGAGAACCCCCTTACACCCAGGTCCACGAGGGGTTATATGTCGGTGGCTGGCCATCGGCGCCGGAGAAGATGCCGCCGGGTGAGCCCGCCGTGATTGACTGCACNTGCGAGTTTCCGAGGATGAAGGGATTCACCGGTGGGTTGCCGTATAGGTGCATCCCGACTTGGGACACGAGGTCCCCTCGACCTGCTGATATTGAATCTGCTGTCAAGTGGGCTTGTCGGAAGAGGGACCTCAATAGGCCCATTTTTGTCCACTGTGCTTATGGTCATGGACGCAGTGTTGCTGTTATGTGTGCACTGCTAGTGGCACTTGGTATCACAGAGGATTGGAAGAATGCTGAGAAGCTGATCAAGCAAAAACGGCCTTACATTCGGATGAATGCTCTCCATCGCAAGGCGCTTGAAGAATGGTCAAGACACCGATTGTCTGTTCCGAAGAAGTTGCAAAGGGCACGCATAAAAATGTCAGTTGTGAATATATCCACCATGAGGCTTCCAACAACTTCTTTGTCTGGAACAACAGCACCCGCTACTAGGACATGTTGTGCCCTTATCAAGAAGAGTCCATCATGTTTGAGATCCATGAAGANTGTGTCTAAAGCATTTGGTTTGAAACCTTCCTCCTTCAGAGTGTCTGCAATGGCAGTATACAAAGTGAAACTGATTGGACCAGATGGTGCAGAGAACGAATTTGAAGCCCCTGATGACTCTTACATTCTGGATTCAGCTGAGAATGCTGGAGTTGAGCTGCCCTACTCATGCAGAGCTGGTGCATGCTCTACCTGTGCTGGCCAAATGGTTTCAGGCTCTGTGGATCAGTCAGATCAATCTTTTCTCGACGATCAGCAAATGGAGAAAGGTTATCTTCTCACATGTGTCTCATACCCAAAATCAGACACTGTGATTTACACCCACAAGGAGGATGAACTCATGTAGCTAGTTATTGTGTCAAACATATATTGTTAGTGTTTGTTTAACTTTCTGAATAATTTTAAATTGAAGATAATTTCTGATATAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	238727	243973	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006470 protein dephosphorylation

GO:0016311 dephosphorylation

GO:0022900 electron transport chain

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0009055 electron carrier activity

GO:0016791 phosphatase activity

GO:0051536 iron-sulfur cluster binding

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000246.1	PF00782.15	DSPc	123	233	2.80E-08
Glyur000002s00000246.1	PF00111.22	Fer2	318	391	4.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.317
SRR1783600	control	10.460
SRR1783602	moderate drought stress	13.490
SRR1811619	moderate drought stress	13.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.300
DRR006520	Root Summer glycyrrhizin high producing strain	11.328
DRR006521	Root Winter glycyrrhizin high producing strain	5.275
DRR006522	Root Winter glycyrrhizin high producing strain	5.150
DRR006523	Root Summer glycyrrhizin low producing strain	8.798
DRR006524	Root Summer glycyrrhizin low producing strain	8.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.654
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.319
SRR2868004	Drought Stress (root)	44.810
SRR2967015	Control (root)	58.675

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.192
SRR9715740	Leaf	16.136
SRR9715741	Leaf	28.581
SRR9715739	Root	18.023
SRR9715742	Root	15.774
SRR9715743	Root	16.604

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.832
SRR8749028	MeJA induced 9h	78.094
SRR8749029	MeJA induced 9h	44.057
SRR8749030	Uninduced	27.072
SRR8749031	Uninduced	15.629
SRR8749032	Uninduced	13.425

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.071
SRR8400027	Control - Root	21.632