Gene detail

Gene detail information of Glyur000002s00000244

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G60740.1	ARM repeat superfamily protein
NR	KHN11463.1	Tubulin-specific chaperone D [Glycine soja]
Swissprot	tr\|Q8L5R3\|TBCD_ARATH	Tubulin-folding cofactor D
trEMBL	tr\|I1NFD2\|I1NFD2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G24470.1}

Sequence

Transcript Sequence

>Glyur000002s00000244.1
ATTTTTGCATCAGTGGATTTGGGAACACTAGCTGTACGAGTTCAGCCTCAGGCGAGTGCCGAGTCTGGAGACCCGACCCATCAGCATCGGCTACACTTGTTAGTGTTACACTGTTACTGGAGGAACTCACTCGAGACTGGTTACTCGTCTTGAAATAGCATCGACCCATTTCCTATATCCCAAAGGTNGCAGACCAGACCAAATGGAACCGAATCAGGAGACAGTTACGGTGGTGAATCAAGAGGACGATGAGTTGGATTCCAAGGAGAGGGTGCTCCACAAGTACTTCCTCCAAGAATGGACCCTCGTCAAGTCNCTCCTCGACGACACCGTTTCCAACGGCCGCGTCTCCCACCCTTCCTCCGCTCACAAAATCAGATCCATTATGGACAAGTATCAAGAGCAGGGTCAGCTTCTAGAACCTTACCTCGAAAGCATAGTTCCCCCACTGATGAACACCATTCGTTCGAGAACAATTGAACTCGGAGTTGACTCGGTTGAAATCCTCGAGATAATCAAGCCAATATGCATAATCGTGAATTCTGTAGTCACTGTTTGTGGATACAAAGCAGTGATCAAGTTCTTCCCTCACCAAGTCTCTGATCTGGAACTNGCCGTGTCTCTCATGGAGAAGTGTCACCACACGAATTCAGAATCATCGCTGAGGCAGGAAAGCACGGGAGAGATGGAAGCCAAATGCGTGATGCTGTTGTGGCTTTATATACTTGTGTTGGTTCCTTTTGACATCTCCACTGTGGATACCAGCATTGCCGACAGTGACAATCTCACTGAGTTTGAGCTCTCACCTCTTGTGTTGAGAATAATAGGGTTCTGTAAGGATTACCTCTCGAATGCTGGGCCCATGCGNACTATGGCTGGATTAGTGCTCTCAAGGCTACTTACTCGTCCAGATATGCCAAAAGCCTTTACGAGCTTTGTTGAGTGGACACACGAGGTCATGTCTTCTGTAAATGAAGATTTACTCCATCCTTTCCAATTACTTGGTGCNGTTGAAGCACTGGCTGCTATTTTCAAGGCAGGGAGTCGGAATCTCTTGCTTGATGTAATTCCTATTGTTTGGAATGACACGTTGATGTTGTACAAGTCTTCAAATGCGACTCAAAGTCCTTTGCTCCGCAAGTATCTGATGAAGTTAACCCAACGGATTGGGCTTACTGCCCTTCCTCATCGATTACCCTCATGGCGTTATACGGGAAGAACCGCCAAACTACATGTTTCTTTAAATACATCCAGTAAAACTGATCAGTCCAATTTGGGTGTGAACGGTAATTACTCCAACTCAAATGAAATTACAGATGAGGCAGAAGATGAGGATATGGATGTTCCAGAAAATGTTGAAGAAATTATTGAGATGTTGCTATCTGGTTTGAGGGATATGGATACTGTTGTCCGTTGGTCTGCAGCAAAAGGCATTGGTCGCATAACTTCGCATTTGACATCTTCCCTTTCTGATGAGGTTTTATCCTCTGTTCTGGAGCTGTTTTCACCTGGTGAGGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTTTTACCTGCTAGTCTTCCCAAAGTGGTGCCTGTTGTTGTGAAGGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTAGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCATTTGGGCGTGCATATTATCACACAGATATGAGGAACGTCTTAGAGGAGCTTGCTCCACACCTCCTAACAGTGGCATGCTATGACCGTGAGGTTAACTGCAGAAGAGCAGCAGCAGCTGCTTTTCAGGAGAATGTTGGAAGACAAGGGAATTATCCAAATGGCATTGACATAGTGAATACTGCAGATTATTTTTCACTTTCTTCTCGAGTAAACTCTTATCTTCATGTTGCCGTCTCCATCGCTCAATATGAAGGATATCTTTTTCCATTTGTGAATGACCTGCTGGATAGAAAAATTTGCCACTGGGATAAAAGCTTGCGAGAACTTGCTGCAGAGGCTCTTTCTTTTCTTGTAAAATATNACCCTCAGTATTTTGCAAGTGCTGTCATGGAGAAGTTAATTCCTTGTACTCTTTCATCTGATTTGTGCATGCGCCATGGTGCAACNTTGGCAACTGGGGAACTTGTTTTAGCTTTACATCAATGCAATTATGCTATTCCCTCAGATAAACAGAAAAGTCTTGCTGGTGTTGTTCCTGCTATTGAGAAAGCACGGCTTTATCGTGGAAAGGGAGGAGAAATAATGCGTGCAGCTGTTTCTCGATTTATTGAATGCATCTCCATATCTAAAGTGGCGTTACCGGAAAAGATCAAGAGAAACTTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGAATGCTGCTGTTAAAGGCCTGAAACACTTCATCCATGCATTACATGCTTCAGATAATAAAGGTACAAGTGATTTGACAGTGAAGTACCTCAATATGTTGACTGATCCAAATGTGGCTGCAAGGAGAGGATCTGCATTGGCCATAGGTGTTTTTCCATATGAGTTATTGGCCAGTCAATGGAGAAATGTGCTTTTGAAGCTTTGTAGCTGTTGTACAATTGAGGAAAACCCTGAAGACAGAGATGCTGAAGCGCGAGTAAATGCTGTCAAAGGGCTCATATCAGTATGTGAAACATTAGTTAATGGAAGAGAGAACACTGCTACCTCTTTCATTGAGAATGATTTTTCTCTGTTCATTCTGATAAAGAATGAGGTGATGATGAGTTTATTTAAAGCTCTTGATGACTATTCTGTTGATAATAGAGGTGATGTAGGTTCTTGGGTTCGTGAGGCNGCATTAGATGGCCTTGAAAAATGTACATGCATGCTCTGTAAGATCGATAAGTCAGGTTGTTTTTCTGGAAAATCAGATGGAAACGAAATTGAATCTATAGTGCAGCCTTTGACTGATAATATGCTTAAGAACAATGCAGAGCTTTTATTATTCGATGAAAATCTTGCTACCAATTTAGTTGGAGGAATTTGTAAGCAAGCTGTGGAAAAGATGGATAAGCTGAGAGAAGCAGCAGCAAANGTTCTCTACAGACTTTTGTACAACCAGATGATTTATATTCCATATATACCTTTCCGAGAAAAGTTAGAAGAAATCATTCCAAAGGAAGCAGATGCAGAATGGGCTGTACCTTCCTACTCTTACCCACGCTTTGTACAGTTACTGCAATTTGGTTGTTATAGCAGAGATGTCATATCGGGTTTAGTTATATCTACTGGTGGGTTGCAAGATTCTTTGAAGAGGGTGTCACTCTTGGCACTGTCAGAGTATCTAGAAGGGGTTGAATCTGAAGACCCTAATGCAAGAATGTCCAGGGAGTACATGNTATCAGTTGACATCCTATGGGTTCTTCAACGATACAAGAAATGCGACAGAGTTATTATTCCCACTTTAAAGACCATTGAGAGTTTGTTCAGCAAAAAGATATTCCTTAATATGGAGGGATCAAAAGACTTCTCTAAGTTGAATGCGGGTATTGCAATACTTGGTTATATAGCTTCCGTAACAGAACCAATCAATATGAGGGCCTTTTCTCAACTTCTCACTTTTCTTGGTCATCGGTTCCCGAAGATTCGAAAAGCCTCAGCTGAACAAGTCTACCTTGTCCTCCTGCAAAATGGAAATCTTGTGGCCGAAGACAAGATTGAGAAAGCACTAGAAATTATTTCTGAGACTTGCTGGGATGGGGACATGGATTTAGCAAAACACCAAAGATTAGAATTGTTTGAGACTGTAGGATTGGAGGTGGGGCCACTTGGCAAGAATAGTGATGGAACACCAAGGAAAACCAGCAGTAANAAGCCTACAAACTTGGATGAAAATGCATCGTATTCCTCATTAGTTGAGTCATCTGGGTTTTGATTTTTGTTGCTGCAATCCTAGGTTTACTGTTATACAATGTAGCTTGCTAGAGTTGATATGAAATTTTTTCATGTGCATTGGTCGAGTTCCAACCATACACATGTCTTCAAAGGATGTTATGTATTTACTGGGTTAACAATTAAGGTGTTATTTTTAGCCAAAAGAAATCCCTTATCTATGGGTGACAACACCTGTCCCCACTCAATTTAGATATTTGAAGTTAGCATTCCAAATCGATATTATTAGTAAT

Protein Sequence

>Glyur000002s00000244.1
MEPNQETVTVVNQEDDELDSKERVLHKYFLQEWTLVKSLLDDTVSNGRVSHPSSAHKIRSIMDKYQEQGQLLEPYLESIVPPLMNTIRSRTIELGVDSVEILEIIKPICIIVNSVVTVCGYKAVIKFFPHQVSDLELAVSLMEKCHHTNSESSLRQESTGEMEAKCVMLLWLYILVLVPFDISTVDTSIADSDNLTEFELSPLVLRIIGFCKDYLSNAGPMRTMAGLVLSRLLTRPDMPKAFTSFVEWTHEVMSSVNEDLLHPFQLLGAVEALAAIFKAGSRNLLLDVIPIVWNDTLMLYKSSNATQSPLLRKYLMKLTQRIGLTALPHRLPSWRYTGRTAKLHVSLNTSSKTDQSNLGVNGNYSNSNEITDEAEDEDMDVPENVEEIIEMLLSGLRDMDTVVRWSAAKGIGRITSHLTSSLSDEVLSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPASLPKVVPVVVKALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYYHTDMRNVLEELAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPNGIDIVNTADYFSLSSRVNSYLHVAVSIAQYEGYLFPFVNDLLDRKICHWDKSLRELAAEALSFLVKYXPQYFASAVMEKLIPCTLSSDLCMRHGATLATGELVLALHQCNYAIPSDKQKSLAGVVPAIEKARLYRGKGGEIMRAAVSRFIECISISKVALPEKIKRNLLDTLNENLRHPNSQIQNAAVKGLKHFIHALHASDNKGTSDLTVKYLNMLTDPNVAARRGSALAIGVFPYELLASQWRNVLLKLCSCCTIEENPEDRDAEARVNAVKGLISVCETLVNGRENTATSFIENDFSLFILIKNEVMMSLFKALDDYSVDNRGDVGSWVREAALDGLEKCTCMLCKIDKSGCFSGKSDGNEIESIVQPLTDNMLKNNAELLLFDENLATNLVGGICKQAVEKMDKLREAAAXVLYRLLYNQMIYIPYIPFREKLEEIIPKEADAEWAVPSYSYPRFVQLLQFGCYSRDVISGLVISTGGLQDSLKRVSLLALSEYLEGVESEDPNARMSREYMXSVDILWVLQRYKKCDRVIIPTLKTIESLFSKKIFLNMEGSKDFSKLNAGIAILGYIASVTEPINMRAFSQLLTFLGHRFPKIRKASAEQVYLVLLQNGNLVAEDKIEKALEIISETCWDGDMDLAKHQRLELFETVGLEVGPLGKNSDGTPRKTSSXKPTNLDENASYSSLVESSGF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	226810	237841	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000244.1	PF12612.3	TFCD_C	941	1112	1.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.007
SRR1783600	control	10.992
SRR1783602	moderate drought stress	15.957
SRR1811619	moderate drought stress	15.659

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.440
DRR006520	Root Summer glycyrrhizin high producing strain	14.534
DRR006521	Root Winter glycyrrhizin high producing strain	11.250
DRR006522	Root Winter glycyrrhizin high producing strain	11.190
DRR006523	Root Summer glycyrrhizin low producing strain	13.478
DRR006524	Root Summer glycyrrhizin low producing strain	13.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.195
SRR2868004	Drought Stress (root)	23.258
SRR2967015	Control (root)	24.472

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.536
SRR9715740	Leaf	12.224
SRR9715741	Leaf	12.931
SRR9715739	Root	5.090
SRR9715742	Root	19.206
SRR9715743	Root	16.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.420
SRR8749028	MeJA induced 9h	11.593
SRR8749029	MeJA induced 9h	5.348
SRR8749030	Uninduced	2.902
SRR8749031	Uninduced	1.112
SRR8749032	Uninduced	2.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.888
SRR8400027	Control - Root	29.189