Gene detail

Gene detail information of Glyur000002s00000235

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10080.1	6.00E-67	RmlC-like cupins superfamily protein
NR	XP_004497160.1	1.32E-130	PREDICTED: germin-like protein subfamily 3 member 2-like [Cicer arietinum]
COG	YP_007207200.1	3.00E-07	oxalate decarboxylase family bicupin [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9SR72\|GL32_ARATH	2.00E-83	Germin-like protein subfamily 3 member 2 (Precursor)
trEMBL	tr\|A0A072VRM6\|A0A072VRM6_MEDTR	2.00E-127	Germin family 1 protein {ECO:0000313\|EMBL:KEH44321.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	182991	183623	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0030145 manganese ion binding

GO:0045735 nutrient reservoir activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000235.1	PF00190.17	Cupin_1	67	199	7.40E-25

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.683
SRR1783600	control	1.991
SRR1783602	moderate drought stress	1.578
SRR1811619	moderate drought stress	1.655

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.228
DRR006520	Root Summer glycyrrhizin high producing strain	11.350
DRR006521	Root Winter glycyrrhizin high producing strain	1.003
DRR006522	Root Winter glycyrrhizin high producing strain	1.462
DRR006523	Root Summer glycyrrhizin low producing strain	15.728
DRR006524	Root Summer glycyrrhizin low producing strain	12.619
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.621

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.651
SRR2868004	Drought Stress (root)	0.078
SRR2967015	Control (root)	0.142

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.549
SRR9715740	Leaf	0.165
SRR9715741	Leaf	1.511
SRR9715739	Root	0.583
SRR9715742	Root	0.122
SRR9715743	Root	0.450

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.032
SRR8749028	MeJA induced 9h	0.305
SRR8749029	MeJA induced 9h	0.242
SRR8749030	Uninduced	2.119
SRR8749031	Uninduced	0.090
SRR8749032	Uninduced	1.277

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.146
SRR8400027	Control - Root	0.000