Gene detail information of Glyur000002s00000234 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54260.1 | 1.00E-137 | TRICHOME BIREFRINGENCE-LIKE 36 |
| NR | KHN11469.1 | 0 | hypothetical protein glysoja_015364 [Glycine soja] |
| Swissprot | tr|Q940H3|TBL36_ARATH | 5.00E-171 | Protein trichome birefringence-like 36 |
| trEMBL | tr|I1NFC2|I1NFC2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 180272 | 183808 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000234.1 | PF14416.1 | PMR5N | 57 | 109 | 2.70E-20 |
| Glyur000002s00000234.1 | PF13839.1 | PC-Esterase | 110 | 382 | 2.30E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.573 |
| SRR1783600 | control | 2.654 |
| SRR1783602 | moderate drought stress | 2.120 |
| SRR1811619 | moderate drought stress | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.763 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.501 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.585 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.146 |
| SRR2868004 | Drought Stress (root) | 8.794 |
| SRR2967015 | Control (root) | 10.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.478 |
| SRR9715740 | Leaf | 1.949 |
| SRR9715741 | Leaf | 1.558 |
| SRR9715739 | Root | 3.098 |
| SRR9715742 | Root | 1.968 |
| SRR9715743 | Root | 2.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.349 |
| SRR8749028 | MeJA induced 9h | 2.320 |
| SRR8749029 | MeJA induced 9h | 1.464 |
| SRR8749030 | Uninduced | 5.831 |
| SRR8749031 | Uninduced | 0.267 |
| SRR8749032 | Uninduced | 0.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.482 |
| SRR8400027 | Control - Root | 19.896 |