Gene detail information of Glyur000002s00000231


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G35130.16.00E-159Tetratricopeptide repeat (TPR)-like superfamily protein
NRXP_006605878.10PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like isoform X2 [Glycine max]
Swissprottr|O82178|PP186_ARATH0Pentatricopeptide repeat-containing protein At2g35130
trEMBLtr|I1NFB8|I1NFB8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00002160610168409+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000231.1PF01535.15PPR1441690.86
Glyur000002s00000231.1PF12854.2PPR_11752046.90E-06
Glyur000002s00000231.1PF13041.1PPR_22122551.80E-14
Glyur000002s00000231.1PF13041.1PPR_22803265.90E-15
Glyur000002s00000231.1PF13041.1PPR_23503988.80E-13
Glyur000002s00000231.1PF13041.1PPR_24204691.40E-09
Glyur000002s00000231.1PF01535.15PPR4945200.0059
Glyur000002s00000231.1PF01535.15PPR5315580.4
Glyur000002s00000231.1PF01535.15PPR5635930.00067
Glyur000002s00000231.2PF01535.15PPR1441690.74
Glyur000002s00000231.2PF12854.2PPR_11752046.00E-06
Glyur000002s00000231.2PF13041.1PPR_22122551.40E-14
Glyur000002s00000231.2PF13041.1PPR_22823282.40E-12
Glyur000002s00000231.2PF13041.1PPR_23543994.70E-09
Glyur000002s00000231.2PF01535.15PPR4244500.0052
Glyur000002s00000231.2PF01535.15PPR4614880.34
Glyur000002s00000231.2PF01535.15PPR4935230.00058
Glyur000002s00000231.3PF01535.15PPR1441690.74
Glyur000002s00000231.3PF12854.2PPR_11752046.00E-06
Glyur000002s00000231.3PF13041.1PPR_22122551.40E-14
Glyur000002s00000231.3PF13041.1PPR_22823282.40E-12
Glyur000002s00000231.3PF13041.1PPR_23543994.70E-09
Glyur000002s00000231.3PF01535.15PPR4244500.0052
Glyur000002s00000231.3PF01535.15PPR4614880.34
Glyur000002s00000231.3PF01535.15PPR4935230.00058
Glyur000002s00000231.4PF01535.15PPR1441690.66
Glyur000002s00000231.4PF12854.2PPR_11752045.30E-06
Glyur000002s00000231.4PF13041.1PPR_22122551.40E-14
Glyur000002s00000231.4PF13041.1PPR_23003491.00E-09
Glyur000002s00000231.4PF01535.15PPR3744000.0046
Glyur000002s00000231.4PF01535.15PPR4114380.31
Glyur000002s00000231.4PF01535.15PPR4434730.00052


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.607
SRR1783600control0.639
SRR1783602moderate drought stress0.172
SRR1811619moderate drought stress0.171

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.427
DRR006520Root Summer glycyrrhizin high producing strain1.238
DRR006521Root Winter glycyrrhizin high producing strain0.103
DRR006522Root Winter glycyrrhizin high producing strain0.075
DRR006523Root Summer glycyrrhizin low producing strain0.151
DRR006524Root Summer glycyrrhizin low producing strain0.141
DRR006525Leaf Summer glycyrrhizin high producing strain29.670
DRR006526Leaf Summer glycyrrhizin high producing strain30.435

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)0.613
SRR2868004Drought Stress (root)0.480
SRR2967015Control (root)0.268

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf4.690
SRR9715740Leaf10.929
SRR9715741Leaf3.832
SRR9715739Root0.301
SRR9715742Root0.435
SRR9715743Root0.466

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.040
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.029
SRR8749031Uninduced0.053
SRR8749032Uninduced0.041

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root0.597
SRR8400027Control - Root0.747

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved