Gene detail

Gene detail information of Glyur000002s00000230.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14290.1	8.00E-136	20S proteasome alpha subunit E2
NR	XP_007211942.1	9.22E-174	hypothetical protein PRUPE_ppa010778mg [Prunus persica]
COG	NP_613670.1	2.00E-69	proteasome subunit alpha [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9M4T8\|PSA5_SOYBN	2.00E-174	Proteasome subunit alpha type-5
trEMBL	tr\|M5WIN7\|M5WIN7_PRUPE	3.00E-174	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}

Sequence

Transcript Sequence

>Glyur000002s00000230.1
AAATTTTTTACAAGTCCCCTTGAGCAAGAAAGCAAGCAATCGCAAATAAGCAAAAGCAAAAGCCTATCTCTGCTCGCTCGCTCGCTCTTCCTCTTCCCACACAAACCAACCACAGTGAAAGAGCAAACTCAGTCCCAGCAGCGCCTTTTCGTGATCTCATCGAATCGAATCGAAGATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCCGAAGGCCGTTTGTTTCAGGTTGAATATGCAATCGAGGCCATCAAGCTGGGATCCACCGCAATTGGGTTGAAGACCAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGCGTATCACTTCGCCACTGCTGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGACCACATAGGTTGTGCAATGAGTGGATTGATTGCTGATGCTCGAACACTTGTTGAGCATGCTCGGGTGGAAACTCAGAATCATAGGTTCTCTTATGGTGAACCGATGACTGTTGAGTCCACAACCCAAGCTCTTTGTGATCTAGCCTTGCGTTTTGGTGAAGGTGATGAAGAATCCATGTCTCGACCTTTTGGAGTGTCTCTCCTCATTGCTGGCCATGATGAGAATGGACCTAGTTTATACTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAAGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATACAACAAGGAGCTAACTCTTCAAGAAGCCGAGACTATTGCTTTATCCATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAAGGTGGCTCCAACATATCATCTCTATACCCCTTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGATTTCCTTTTGCGTGGTTTGCTTCTCAAGCATTTGTTTCCTAGTCTTCCTGCCTGTACGTCTAATTTAGTCTTGCGCTGGAACTTTTTTGGTCGATGATNCTACATGTAGTGCTGTTGCACTTGTTGTGGCCAAGTTATACACTGTACTAGATTCTCCTATCATAGTTGCTGCATTCGGTCTAGTTGGAATTGAGGACTAAAGATTTCGATGTTTGGGAAAAACAATACATTAATGCTCTTTTCGAGAACCATACACAAACACAAGCACCGTGCTAGTATATTTATTACTGTATGAGATTGATATNAAGGAGTGGGGAGATAGAGACGTGTTTACAGAGCATTTAGGAATGATTCAAGTCATTCACAAAAGATAACATGGAAAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	155164	159540	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02729	PSMA5	EC:3.4.25.1	Proteasome	map03050

Gene Ontology

biological_process

GO:0006511 ubiquitin-dependent protein catabolic process

GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component

GO:0005839 proteasome core complex

GO:0019773 proteasome core complex, alpha-subunit complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000230.1	PF10584.4	Proteasome_A_N	8	30	3.50E-14
Glyur000002s00000230.1	PF00227.21	Proteasome	31	218	1.50E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.499
SRR1783600	control	66.443
SRR1783602	moderate drought stress	52.076
SRR1811619	moderate drought stress	51.822

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.707
DRR006520	Root Summer glycyrrhizin high producing strain	102.416
DRR006521	Root Winter glycyrrhizin high producing strain	115.509
DRR006522	Root Winter glycyrrhizin high producing strain	111.969
DRR006523	Root Summer glycyrrhizin low producing strain	98.783
DRR006524	Root Summer glycyrrhizin low producing strain	98.659
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.625
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.314

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	160.248
SRR2868004	Drought Stress (root)	129.179
SRR2967015	Control (root)	125.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.258
SRR9715740	Leaf	80.082
SRR9715741	Leaf	90.013
SRR9715739	Root	90.612
SRR9715742	Root	100.480
SRR9715743	Root	99.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	137.763
SRR8749028	MeJA induced 9h	81.136
SRR8749029	MeJA induced 9h	108.695
SRR8749030	Uninduced	42.661
SRR8749031	Uninduced	30.909
SRR8749032	Uninduced	48.818

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	135.709
SRR8400027	Control - Root	118.329