Gene detail information of Glyur000002s00000226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_008344356.1 | 8.33E-08 | PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica] |
| trEMBL | tr|B9SZG2|B9SZG2_RICCO | 3.00E-06 | Nuclease, putative {ECO:0000313|EMBL:EEF31001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 123974 | 124231 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000226.1 | PF13456.1 | RVT_3 | 13 | 51 | 2.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.533 |
| SRR1783600 | control | 5.824 |
| SRR1783602 | moderate drought stress | 13.668 |
| SRR1811619 | moderate drought stress | 11.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.523 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.917 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.483 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.655 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.509 |
| SRR2868004 | Drought Stress (root) | 1.943 |
| SRR2967015 | Control (root) | 3.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.262 |
| SRR9715740 | Leaf | 1.197 |
| SRR9715741 | Leaf | 1.017 |
| SRR9715739 | Root | 12.527 |
| SRR9715742 | Root | 1.277 |
| SRR9715743 | Root | 4.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.085 |
| SRR8749028 | MeJA induced 9h | 0.260 |
| SRR8749029 | MeJA induced 9h | 0.648 |
| SRR8749030 | Uninduced | 1.181 |
| SRR8749031 | Uninduced | 0.420 |
| SRR8749032 | Uninduced | 1.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.824 |
| SRR8400027 | Control - Root | 2.556 |