Gene detail information of Glyur000002s00000220 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09290.1 | 2.00E-76 | |
| NR | KHN11479.1 | 3.30E-176 | hypothetical protein glysoja_015374 [Glycine soja] |
| trEMBL | tr|I1NFA6|I1NFA6_SOYBN | 6.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 90384 | 93977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000220.1 | PF02926.12 | THUMP | 221 | 325 | 4.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.750 |
| SRR1783600 | control | 23.750 |
| SRR1783602 | moderate drought stress | 33.328 |
| SRR1811619 | moderate drought stress | 33.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.749 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.908 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.546 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.993 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.782 |
| SRR2868004 | Drought Stress (root) | 23.614 |
| SRR2967015 | Control (root) | 27.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.868 |
| SRR9715740 | Leaf | 13.242 |
| SRR9715741 | Leaf | 10.013 |
| SRR9715739 | Root | 12.135 |
| SRR9715742 | Root | 12.169 |
| SRR9715743 | Root | 13.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.115 |
| SRR8749028 | MeJA induced 9h | 60.023 |
| SRR8749029 | MeJA induced 9h | 61.917 |
| SRR8749030 | Uninduced | 53.097 |
| SRR8749031 | Uninduced | 44.396 |
| SRR8749032 | Uninduced | 50.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.369 |
| SRR8400027 | Control - Root | 27.869 |