Gene detail information of Glyur000002s00000211 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16860.1 | 5.00E-120 | GCIP-interacting family protein |
| NR | XP_004497176.1 | 0 | PREDICTED: pre-mRNA-splicing factor syf2-like [Cicer arietinum] |
| trEMBL | tr|I1LF43|I1LF43_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G42810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 17132 | 19549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000211.1 | PF08231.7 | SYF2 | 158 | 305 | 2.30E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.591 |
| SRR1783600 | control | 32.200 |
| SRR1783602 | moderate drought stress | 45.977 |
| SRR1811619 | moderate drought stress | 46.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 55.015 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.968 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 88.471 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.645 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.639 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.168 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 64.429 |
| SRR2868004 | Drought Stress (root) | 72.370 |
| SRR2967015 | Control (root) | 76.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.357 |
| SRR9715740 | Leaf | 43.740 |
| SRR9715741 | Leaf | 59.377 |
| SRR9715739 | Root | 2.083 |
| SRR9715742 | Root | 21.542 |
| SRR9715743 | Root | 18.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.080 |
| SRR8749028 | MeJA induced 9h | 112.315 |
| SRR8749029 | MeJA induced 9h | 109.630 |
| SRR8749030 | Uninduced | 114.414 |
| SRR8749031 | Uninduced | 203.998 |
| SRR8749032 | Uninduced | 111.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.971 |
| SRR8400027 | Control - Root | 50.601 |