Gene detail

Gene detail information of Glyur000001s00000207.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04730.1	1.00E-77	indoleacetic acid-induced protein 16
NR	XP_004495802.1	1.72E-134	PREDICTED: auxin-responsive protein IAA16-like [Cicer arietinum]
Swissprot	tr\|O24407\|IAA16_ARATH	2.00E-105	Auxin-responsive protein IAA16
trEMBL	tr\|I3SVA0\|I3SVA0_MEDTR	3.00E-134	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000001s00000207.1
CCATATTATATCACCAAAACCATCGCCCAGCCCCAGAACTCTTTCCAATCTCACAATTCTCAAATTCCCAGTTTCGCTTTCACCCAAAGAGATTCCCTTTCATAGATCAGGGGTACTCTGTTTGTTTCTGACTCGTGAGGGTTGGTTTGGTTTGGTTAGAAAGAAATGACAATTGGCGTGGTGGACGCTGAGCGAGACAAGTACAGCATGATAAATTTTGAAGAGACCGAGTTGCGACTCGGGCTGCCTGGCGGGTCGGCGAACGATATTCATGGCGAGTCGTCGCCGCTGAAAAGCAGCGGTGGGAAGAGAGGTTTCTCGGAGACAGCTAACGTGGATTTGAAGCTTAACCTTTCTTCTTCCACTGGTAACGACTTGGCCTCTTCCTCTGTTTCGCCCTCCACTGTGGCTACTGCACAAAAGGGCAAAGAGAAGACTACTGCTACTGTTGCTGCTACTGCACCTCCTCCTGCTAATGACCCAGCAAAACCACCTGCCAAGGCACAAGTTGTGGGGTGGCCACCAGTTCGATCCTTCAGAAAGAACATCGTGAGTACTAGTANTAGTGTTCAAAAGAGCAACAACGAAGAAGCGGAGAAGAGCGCCACCACCACCGGTGGCGCCGGNGGAGGAGCGTTCGTGAAGGTGAGCATGGATGGAGCACCGTATCTACGGAAGGTGGACCTCAAGTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCGAAAATGTTCAGCTCCTTCACGATTGGGAATTGTGGGTCCCAAGGCATGAAGGACTTCATGAATGAGAGCAAATTGATGGACCTTTTGAATGGCTCTGATTATGTACCCACTTATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTCCCCTGGGAAATGTTCGTTGAATCCTGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATTGGGTTAGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGAAAATGAAATTATCATCCTTAATTTCGTGTTCCGCCGCGACAACAATATTCTGCTTCTTGTTGATCATTGGCGNCCCAGGGAAGCAAATTGGCTCGAGCAAGGTCGAGTCTGATATAGGAATTAATAAGAGTTTTATTATATCATTATCATTATTATTATTGTTATCTGTCTGTGTCTGTGCCGCATCTTTTTTGTAATTTTTCTTCTTATATGTGTATTTTATATGAATGAGAAAATAGTTGGAAATTCGTCAGGGACAAGAAAATAATATAGAAGATGTTNATATGACCCCGTTTTTGTTTCCAAACAAGGGAAGAAAAAAATGTGACTCTGTCTATGGCCAGCGTGCTTTGCTTGACTTAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	1109136	1112284	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000207.1	PF02309.11	AUX_IAA	16	266	2.30E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	308.376
SRR1783600	control	309.971
SRR1783602	moderate drought stress	447.289
SRR1811619	moderate drought stress	443.247

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	423.560
DRR006520	Root Summer glycyrrhizin high producing strain	419.607
DRR006521	Root Winter glycyrrhizin high producing strain	197.936
DRR006522	Root Winter glycyrrhizin high producing strain	192.374
DRR006523	Root Summer glycyrrhizin low producing strain	459.536
DRR006524	Root Summer glycyrrhizin low producing strain	456.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	96.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	96.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	177.050
SRR2868004	Drought Stress (root)	298.263
SRR2967015	Control (root)	273.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	244.642
SRR9715740	Leaf	231.688
SRR9715741	Leaf	200.547
SRR9715739	Root	360.539
SRR9715742	Root	493.885
SRR9715743	Root	468.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	330.708
SRR8749028	MeJA induced 9h	260.842
SRR8749029	MeJA induced 9h	460.241
SRR8749030	Uninduced	148.899
SRR8749031	Uninduced	183.458
SRR8749032	Uninduced	273.529

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	323.261
SRR8400027	Control - Root	337.603