Gene detail information of Glyur000001s00000204 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28750.1 | 8.00E-18 | Bacterial sec-independent translocation protein mttA/Hcf106 |
| NR | ACJ85933.1 | 5.06E-47 | unknown [Medicago truncatula] |
| COG | YP_001867634.1 | 5.00E-18 | twin arginine translocase protein A [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9XH46|TATA_PEA | 3.00E-46 | Sec-independent protein translocase protein TATA, chloroplastic (Precursor) |
| trEMBL | tr|B7FMF0|B7FMF0_MEDTR | 2.00E-47 | Uncharacterized protein {ECO:0000313|EMBL:AFK48565.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 1085696 | 1087022 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000204.1 | PF02416.11 | MttA_Hcf106 | 63 | 112 | 2.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.652 |
| SRR1783600 | control | 7.691 |
| SRR1783602 | moderate drought stress | 10.193 |
| SRR1811619 | moderate drought stress | 10.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.544 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.760 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.383 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 79.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.851 |
| SRR2868004 | Drought Stress (root) | 20.034 |
| SRR2967015 | Control (root) | 24.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.694 |
| SRR9715740 | Leaf | 102.673 |
| SRR9715741 | Leaf | 88.143 |
| SRR9715739 | Root | 11.135 |
| SRR9715742 | Root | 12.566 |
| SRR9715743 | Root | 12.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.143 |
| SRR8749028 | MeJA induced 9h | 16.301 |
| SRR8749029 | MeJA induced 9h | 29.478 |
| SRR8749030 | Uninduced | 49.046 |
| SRR8749031 | Uninduced | 46.295 |
| SRR8749032 | Uninduced | 55.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.083 |
| SRR8400027 | Control - Root | 25.051 |