Gene detail

Gene detail information of Glyur000001s00000201.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28840.2	0	GDP-D-mannose 3',5'-epimerase
NR	ACM47361.1	0	GDP-mannose-3',5'-epimerase [Caragana korshinskii]
COG	YP_589972.1	2.00E-123	NAD-dependent epimerase/dehydratase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q93VR3\|GME_ARATH	0	GDP-mannose 3,5-epimerase
trEMBL	tr\|B9VU69\|B9VU69_9FABA	0	GDP-mannose-3',5'-epimerase {ECO:0000313\|EMBL:ACM47361.1}

Sequence

Transcript Sequence

>Glyur000001s00000201.1
GCGGGTGGAGAGGAAATGAGGAATGAAAAATGAAACGGTGTATGTGTGTGTGTGTGTGAGTGGCTACTAGTCCTACAGGTAGCTAAGCCAATTATTATCGTGTACACAAAATAACGAATGAGTGGCCCTCACTTCTCATCCTATATATAGCCATTCCTATCACTCCCCATTCCCTCTCAAACCGTTTCTCTTCCTCTCCTCTCCATACATTATCACAAACAACTCCTGTCTCTCTCAACCTCTTTGTGTTTCCTCTGCACTGCACAGAATGGGAAGTACTGGAAAAACTGACTATGGGGCATACACCTATGAGAACCTCGAGAGAGAGCCTTACTGGCCATCGGAAAAGCTAAGAATATCCATCACTGGTGCTGGGGGTTTTATAGCATCACACTTGGCGCGTCGCCTCAAGACGGAGGGACATTACATTATTGCTTCTGACTGGAAGAAAAATGAGCACATGACTGAGGACATGTTCTGTGATGAATTCCATCTTGTTGATCTCAGGGTCATGGATAACTGCCTGAAGGTTACTAAGGGGGTTGACCATGTTTTCAATCTTGCTGCGGATATGGGTGGGATGGGTTTTATTCAGTCCAATCACTCTGTCATTATGTACAACAACACGATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAATGGCATTAAGAGGTTCTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGCTGGAAACTACTAATGTGAGCTTGAAAGAGTCTGATGCATGGCCTGCTGAGCCACAAGATGCGTATGGGCTAGAGAAGCTTGCAACGGAGGAGTTGTGCAAGCACTATAACAAAGATTTTGGAATTGAGTGTCGCATTGGGAGGTTCCATAACATATATGGCCCTTTTGGGACATGGAAAGGCAAGCTCTTAACTGAATTGCAAACTTTTGTAGTTTGTGGAAGGGAGAAGGCTCCAGCTGCTTTTTGTCGAAAAGCAATCACATCCACTGACAGATTTGAGATGTGGGGAGATGGCTTGCAAACACGATCATTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTCAGGTTGACTAAATCTGACTTCCGTGAGCCAGTAAATATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATCGTTCTTAGCTTTGAGAACAAGAATATTCCTATACATCACATTCCTGGACCAGAGGGTGTTCGTGGTCGTAACTCAGACAATACACTTATAAAAGAGAAACTTGGCTGGGCTCCAACAATGAAATTGAAGGATGGGCTGAGGATTACCTACTTCTGGATCAAGGAACAGCTCGAGAAGGAGAAAGCTAAAGGGTTTGATACATCAGTATATGGGTCATCCAAAGTGGTGCAAACCCAAGCCCCAGTTCAGTTAGGCTCACTTCGGGCAGCAGACGGCAAAGAGTGAAAGCAGTCAATTCATGGCAGTAGTAGTCACTTAAGTGTTTCAAGCAAAGAGCTGGCTTTATATTGCCACTTTAATAGAGGCCCATTGTTATGGTTAATTACCTGTTAATATCTTATGTCTGCAGGTTGTTCATGTGTAGAGCGTAAGCCTTGATGCTCCTATTGNACTTTGAATGGCCTTTTTAAGGCATTACTTGGTGCTTGAGGTGTTTTACTGCACTAGAAGTTTTAGATTATTTGTTTCGAGTGTCAATCATTGATGAATAAGCATACAGTTGTTTTCTTCCTTGTGAAGTTCAATGTAATTGATTGATATTCAGGTATCTCTGAATGTTTTGTCAATCTATGTTTTGCTGGATATATTTATTATTTTAGCANAAAGCTTTGTGATGGTCTTGCAAAGGCGGTTTGCTGCTTGACAGAAGGTCTAAGAGTATATTTGCTGTGTGCTGTAAATACTTTGTAAGTTATTTTTTTAGCAGGAAAAAAAAAACACCGGCTAAAGACTTATTTTTGTTATATAGTAAGTNATTATTATACTGTTTTTATTACAACAAAAATGGTACACTTTAATGGTCAATATTATTTTCCAGTAGTTAGCTACAGAGTATATGCTGTCCCCGTTTGTCTTTTGATGCGTTCGAGCTAGTGAAATAACCCAAAGCAATATTACGTCCACAATGAATTGAGTAACATGATTTGAGATACTGCCAGACTTCGTTCAAGTATCAGTTCCCTTTTTTTTTTTGGTCAAAAGTATCAGTTCCCTCTTACACTGGAAAATTACATGCTCATGCTTGTTTTATCCTTTTTGGTCAATTGCTCATATGCTTGTTCGAAGGCCGCGGAATATTACACTGCCATTCCTGATGTTTCTCCCCGCTTTGCTTGTGCGGGCTTTAGTACAAGCAATNTTTTCCTTTGGGCTTTGATTTTGTAATTTGGGCCTATGTCAATCTCTTATCTGAACAGGAAAACAAAAAAATGAGAACAAAGAAAATCCTCCTCCTACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	1068783	1073067	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10046	GME	EC:5.1.3.18 5.1.3.-	Ascorbate and aldarate metabolism	map00053
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000201.1	PF01370.16	Epimerase	30	282	2.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	64.800
SRR1783600	control	64.924
SRR1783602	moderate drought stress	54.597
SRR1811619	moderate drought stress	54.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.733
DRR006520	Root Summer glycyrrhizin high producing strain	54.276
DRR006521	Root Winter glycyrrhizin high producing strain	37.015
DRR006522	Root Winter glycyrrhizin high producing strain	36.152
DRR006523	Root Summer glycyrrhizin low producing strain	38.861
DRR006524	Root Summer glycyrrhizin low producing strain	38.837
DRR006525	Leaf Summer glycyrrhizin high producing strain	91.393
DRR006526	Leaf Summer glycyrrhizin high producing strain	91.055

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.523
SRR2868004	Drought Stress (root)	60.523
SRR2967015	Control (root)	68.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.548
SRR9715740	Leaf	75.159
SRR9715741	Leaf	52.052
SRR9715739	Root	48.675
SRR9715742	Root	47.139
SRR9715743	Root	44.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.587
SRR8749028	MeJA induced 9h	14.905
SRR8749029	MeJA induced 9h	18.193
SRR8749030	Uninduced	5.372
SRR8749031	Uninduced	3.639
SRR8749032	Uninduced	4.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.499
SRR8400027	Control - Root	39.499