Gene detail

Gene detail information of Glyur000001s00000197

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04810.2	0	NIMA-related kinase 2
NR	XP_004495793.1	0	PREDICTED: serine/threonine-protein kinase Nek1-like [Cicer arietinum]
COG	YP_006527485.1	1.00E-21	serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprot	tr\|Q2QMH1\|NEK2_ORYSJ	0	Serine/threonine-protein kinase Nek2
trEMBL	tr\|V7BH15\|V7BH15_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16815.1}

Sequence

Transcript Sequence

>Glyur000001s00000197.1
ATGGATATCAGTACAAATGTAACCTCTCTCTGGATTTGTCCTTTTCTTTCTCCGAACGAGAATGGCGAAAGAGCTTCTTCTGCAACTTCATCTGCTGCTTCTTCTTCCCGAACAACGGTGTCGTTTTGCAGCTCCTCTGNCAATGCTCCACTTCGCATTCTCCGCTTTGTGACTCCTCTTTCCGTCTACATTTCGAATCCCGTGGATCCGTTCAAACTTCTTCTCGTTTCTCGCACCCACCGACTCAAGCAACTCAGGAGAGGGGATTCTCTTACTAAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCCGCTCTTCTTATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGATGGAGCTAATCTCTAAATTTCGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGCGAGGGCGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGCGTTTTGTTTTCCGAGGAGAAACTTTGTAAATGGCTTGTTCAACTTCTTATGGCACTCGACTACCTGCACATGAATCACATTCTTCACCGTGATGTGAAGTGTTCAAATATCTTCTTGACAAAAGATCATGACATACGTCTGGGTGACTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGNTACATGTGCCCCGAGCTTCTTGCTGATATCCCTTATGGTTCTAAATCAGATATTTGGTCCCTGGGATGTTGTATGTATGAAATGACAGCACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAAGTCCATTGTGGCTCCACTGCCAACGAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGCTGCTTGGGCACCCACATCTTCAATCTTATGTTCTGAAGATCCATCTCAAAATCAATAGCCCCAGGCGAGATACATTGCCTGTTCACTGGCCAGAGTCAAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATACTGTTTCCATCTGTAGGGATAAGCGCCATTCTTTCAGTAATGACCGGACTTTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTCTGCTCTACCCTAGAAATAGATTGTACTCCTGATCATTTGAATCAAAGGTTAGCTGAACTATGTACCAGAGATAGCGGTGACACGAAGTCAATCCATAAACCTGTTGTTTCCAGAACTTCTAGTATTGCTAAGACTCCAAGATTCACTTCATCAAAAGTTTCTGCCACCAACAGGAAATCAATGGAACCCTCAAAGAATCGTAAAGTGGTAAGGCAAGCTCTTCCTGTTTCACACAATGGCACAAAATCTGCAAATCGCAGAGCATCATTTCCACTGCCTGTGAAGGGTGGTATTCGGCAGCCTCCTTGCANGCAGAATGTTGGTTTGCTTAGCCATGTGTCTTCGCCAGATATCTCGGTCAACTCTCCCCGTATTGATAAGATAGCTGAATTCCCATTAGCATCATATGAAGATTCTTTGTTCCCTATCAATAGAACATCAACCTCTGAACAAGGTTCCTCAGGCTTCCCATCTCGTGACAATCATTCAACTGTGATAGACAAATGCACAATAGAGGTGTGTGATAGAGCCTCTGTTAAGCCTAGTACGGATGCTTGGCAGGGAATTAAGCGCAGTATGTTAAAGGAAATTGATGAGGTCAAAAGTGGTTCCTCTGATCAAAATGCAACAGCNGGTGCATCAAGCCGCACCTCTTCAGACTTAAGGCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCAAGCAAGGTATGATGAACTGGGGGTTTTGTTGAAACCATTTGGGCCCGGGAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGNAAGAGCTTCAAAGAGAACACTTGCAATCCGGAAGAATCCCTGTAAACTGCTGTAGTGTACTATAGTCATTTTTACAGAGTCCAGTGTTTCTTTTATCACACGGGAGCATTTAGCCAGCTGATTTTTGTAGGTTATTGCATTTTTTCTTCTTCATTTACCCTTTTTTNCCCCTTCTAAATAATGATAACTCAAGCCTTCAAACTGATGAATGAAGCAGACGATAAATATTTTNATGATAATATTACCTGTCTGATCCGTTTGTAATGGTCGTAATAGATATTCTTGGATGCCCTAATCCTTATTCCTTGCCAGAAAAGGGAGCAAAGGTTGGTGTCTTAACCTTTATATTCGTGCATTTGTCGTCTTGATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	1040460	1047850	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000197.1	PF00069.20	Pkinase	117	344	4.90E-54
Glyur000001s00000197.2	PF00069.20	Pkinase	117	344	4.90E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.963
SRR1783600	control	44.748
SRR1783602	moderate drought stress	29.312
SRR1811619	moderate drought stress	28.858

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.957
DRR006520	Root Summer glycyrrhizin high producing strain	16.777
DRR006521	Root Winter glycyrrhizin high producing strain	26.860
DRR006522	Root Winter glycyrrhizin high producing strain	26.251
DRR006523	Root Summer glycyrrhizin low producing strain	13.242
DRR006524	Root Summer glycyrrhizin low producing strain	13.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.501

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.684
SRR2868004	Drought Stress (root)	21.355
SRR2967015	Control (root)	23.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.370
SRR9715740	Leaf	9.799
SRR9715741	Leaf	6.096
SRR9715739	Root	8.515
SRR9715742	Root	15.075
SRR9715743	Root	12.791

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.111
SRR8749028	MeJA induced 9h	17.129
SRR8749029	MeJA induced 9h	25.030
SRR8749030	Uninduced	2.215
SRR8749031	Uninduced	1.044
SRR8749032	Uninduced	5.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.056
SRR8400027	Control - Root	46.101