Gene detail

Gene detail information of Glyur000001s00000188.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G04870.2	zeta-carotene desaturase
NR	XP_004495784.1	PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like isoform X1 [Cicer arietinum]
COG	NP_441720.1	zeta-carotene desaturase [Synechocystis sp. PCC 6803]
Swissprot	tr\|Q9SMJ3\|ZDS_CAPAN	Zeta-carotene desaturase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|G7I6X1\|G7I6X1_MEDTR	Zeta-carotene desaturase {ECO:0000313\|EMBL:AES61266.2}

Sequence

Transcript Sequence

>Glyur000001s00000188.1
CGGACCGCAACAATTGGGTAAGATGGATAAAAAAGCAGGCAAGCAAACCAATAGCTGACACGTGGCATAGATGAAATCCCACCGAAAATAAGGACACGTTTGGTGAGTGTCAAAGTGGATGAATGGATGTCTTCACTTTCCACTAGCTAGCACACCCCTGAAAACAACACGCCACGACGACGACCAAGGAAGGAGGGTGTGTTGTTGTTCCATTATCTNTCGCTAATGGCAGCGGCAGTGGCATCTCCAATTTCGATTAATACATATATATACTACTAGAGTTGGCTTGGCTACTTAGTATTCAATTGCAATTTCTTTAATTAATAATATAATAATTCATGTGGTGAGTGTCACCACTCACTCACATGCTCTAATCCCTTCAACTACCAGACAAATTTGCCAATCCCAGCATCTCCTCCCAACCTACGTAGCCAGATACTCCTTCCTTCCTTAGTTCGGTTCATGCTCTTTTTTCTTTTCGTATACATAATTAAGCACTAGCACACGCCTCATACTTCCCCTTTTTCTCTTCTGATAACAAAGTCGGTTCTTTTTTTTTTTTTTGCCCTTTACCTCTGACAATGGCTTCTTTGATCCATTGTCCGGCNACTTCTCTCTCCGCAACTCGAGGAGACTCTGTTGGGTTCTTTGTCCCCAGCAGTTGCCGTTTCACCAAGACCCACAGGGCTCGGGTTCGTTGCTCTTTANATGCTAATGTTTCCGACATGAGTGTCAACGCGCCAAAAGGACTGTTTCCTCCCGAACCTGAACATTATCGAGGACCCAAGCTGAAAGTTGCTATTGTAGGAGCTGGGCTTGCTGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGGCATGAGGTGGATATATATGAGTCGAGGTCTTTTATTGGTGGCAAAGTTGGTTCTTTCGTTGATAAACGTGGAAATCACATTGAAATGGGACTGCATGTTTTCTTCGGTTGCTACAGCAATCTTTTCCGATTGATGAAAAAGGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACATTTGTAAACAAAGGGGGTCAAATTGGAGAACTAGATTTNCGCTTCCCGGTTGGGGCACCATTACACGGGATAAATGCTTTTTTGTCCACAAATCAGCTTAAGACTTATGATAAGGCTAGAAATGCTTTGGCTCTTGCCCTGAGTCCAGTTGTCAAAGCTCTTGTTAATCCAGATGGTGCATTGAGGGACATAAGGAATTTGGATAGTATTAGCTTTTCAGATTGGTTTTTATCTAAAGGTGGCACACGCGTGAGTATTCAAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTGATAACATCAGTGCCCGTTGCATGCTTACTATATTTGCATTGTTTGCCACGAAGACTGAGGCTTCCCTTTTGCGAATGCTNAAGGGTTCACCAGATGTTTATTTGAGTGGTCCTATCCGGAAGTACATCACAGATAGAGGGGGCAGGTTCCATCTTAGGTGGGGATGCAGAGAAATACTTTATGATAAATCTGCTGATGGGAGCACTTATGTTACAGGACTTTCCATGTCAAAGGCTACTGCCAAGAAAATTGTGGAAGCTGATGCTTATGTTGCTGCCTGTGATGTCCCTGGAATTAAAAGATTAATTCCGTCAGAGTGGAGGGAAAAGGAGTTTTTCAATAATATCTACGAACTGGTTGGAGTTCCTGTGGTCACAGTACAACTTAGATACAATGGTTGGGTCACAGAATTGCAGAACCTAGAAAAGTCAAGGCAACTGAGGAAAGCTACTGGGTTAGATAACCTTCTCTATACTCCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTAACATCTCCTGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGATGAAATTATTGCAAGGGTAGCAAAACAGGTTTTATCACTNTTCCCATCAGCTCAAGGTTTAGAAGTGACTTGGTCATCTGTGGTTAAAATTGGCCAATCTCTGTACCGCGAGGGACCCGGAAAAGATCCATTTAGACCTGATCAAAAGACACCGGTGAAGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGGCAAGTTTANTTTGTCAGGACTACATAGACAGCATGGAAGGTGCAACCTTATCCGGCAGACAAGCTTCGGCCTATATCTGCGATGCTGGGGAAGAGTTGGTGGCATTGCGGAAGGAGGTTGATGCGCAGTTTAAAGACGACCTTAAAATTGCAAATATTAAAGATGAATTGAGTCTAGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	980137	986445	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00514	ZDS, crtQ	EC:1.3.5.6	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process

GO:0016117 carotenoid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016719 carotene 7,8-desaturase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000188.1	PF01593.19	Amino_oxidase	79	549	6.20E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.270
SRR1783600	control	16.357
SRR1783602	moderate drought stress	18.232
SRR1811619	moderate drought stress	18.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.370
DRR006520	Root Summer glycyrrhizin high producing strain	27.249
DRR006521	Root Winter glycyrrhizin high producing strain	20.595
DRR006522	Root Winter glycyrrhizin high producing strain	19.564
DRR006523	Root Summer glycyrrhizin low producing strain	27.777
DRR006524	Root Summer glycyrrhizin low producing strain	28.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	82.481
DRR006526	Leaf Summer glycyrrhizin high producing strain	82.009

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.183
SRR2868004	Drought Stress (root)	62.002
SRR2967015	Control (root)	47.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.156
SRR9715740	Leaf	87.249
SRR9715741	Leaf	82.623
SRR9715739	Root	9.435
SRR9715742	Root	30.970
SRR9715743	Root	25.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.842
SRR8749028	MeJA induced 9h	27.478
SRR8749029	MeJA induced 9h	12.952
SRR8749030	Uninduced	13.368
SRR8749031	Uninduced	16.099
SRR8749032	Uninduced	7.187

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.704
SRR8400027	Control - Root	27.004