Gene detail information of Glyur000001s00000183 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28050.2 | 8.00E-82 | Cytidine/deoxycytidylate deaminase family protein |
| NR | XP_007144808.1 | 2.22E-117 | hypothetical protein PHAVU_007G185600g [Phaseolus vulgaris] |
| COG | YP_004166599.1 | 1.00E-35 | guanine deaminase [Cellulophaga algicola DSM 14237] |
| Swissprot | tr|Q9S7I0|TADA_ARATH | 4.00E-16 | tRNA(adenine(34)) deaminase, chloroplastic (Precursor) |
| trEMBL | tr|V7BG60|V7BG60_PHAVU | 8.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW16802.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 956964 | 959785 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000183.1 | PF00383.17 | dCMP_cyt_deam_1 | 36 | 135 | 1.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.196 |
| SRR1783600 | control | 9.122 |
| SRR1783602 | moderate drought stress | 5.097 |
| SRR1811619 | moderate drought stress | 4.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.889 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.036 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.607 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.701 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.003 |
| SRR2868004 | Drought Stress (root) | 20.297 |
| SRR2967015 | Control (root) | 19.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.732 |
| SRR9715740 | Leaf | 13.977 |
| SRR9715741 | Leaf | 15.375 |
| SRR9715739 | Root | 5.378 |
| SRR9715742 | Root | 7.505 |
| SRR9715743 | Root | 7.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.860 |
| SRR8749028 | MeJA induced 9h | 1.493 |
| SRR8749029 | MeJA induced 9h | 3.134 |
| SRR8749030 | Uninduced | 0.500 |
| SRR8749031 | Uninduced | 1.068 |
| SRR8749032 | Uninduced | 2.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.100 |
| SRR8400027 | Control - Root | 22.981 |