Gene detail

Gene detail information of Glyur000001s00000180.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G54490.1	exoribonuclease 4
NR	XP_006606479.1	PREDICTED: 5'-3' exoribonuclease 4-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FQ04\|XRN4_ARATH	5'-3' exoribonuclease 4
trEMBL	tr\|I1NIU2\|I1NIU2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G37260.1}

Sequence

Transcript Sequence

>Glyur000001s00000180.1
CGTGATGATGAGTGGTTGAATCGTGGAAGCCGCCCAAAAGCAACACTAGTAGAAGGGAACTTAACTTTCATCGATCNACAAGTCCGTCCCAATTCCCAAACACTCTCTTTTCGTCGTTTCCAAACTGGTCGGTAAACATGGGAGTGCCAGCATTTTACCGGTGGCTCGCCGACCGCTACCCGCTCTCGATCTCCGATGTGGTGGAGGAAGATCCCTCCGTCGCCGACGACGGCGTTCCGTTGCCTATTGATTTGTCTAAACCTAATCCCAACGGCATGGAGTTCGACAACTTGTACTTGGACATGAACGGCATCATTCACCCTTGTTTTCACCCTGATGGCAAGCCAGCACCTGCTACCTATGACGATGTGTTCAAATCAATATTTGATTATGTTGACCATCTCTTTTCATTGGTTCGTCCGAGGAAGCTTCTCTACCTTGCAATTGATGGTGTTGCACCAAGAGCCAAAATGAATCAGCAACGTTCTCGGCGCTTCCGAGCTGCAAAGGATGCTGCTGAGGCTGAAGCTGAAGAGGAAAGACTGAGGAAAGAATTTGTGGGTGAGGGAAAACTTCTGTCTTCTAGAGACAAGCCCGAGACTTCAGACTCAAATGTCATCACCCCTGGCACTCAATTTATGGCAGCTCTGTCGGTGGCTCTTCAGTATTATGTGCAGGCTAGATTGAACCTCAACCCTGCCTGGCAAAATATAAAGGTTATACTTTCTGATTCAAATGTGCCTGGCGAGGGAGAACATAAAATAATGGAATACATCCGTTTACAACGTAACATTCCTGGTTTCAATCCAAATACTCGNCACTGTTTGTATGGATTGGATGCTGATTTGATTATGCTCTCCTTAGCCACACACGAGGTTCACTTCTCAATATTGAGAGAGGTAATTTCTTTACCTGGACAACACGACAAGTGTTTTTCGTGTGGCCAAGTTGGCCATTTTGCAGCTGATTGTCATGGTAAGCCAGGCGCTAAAGACGAGGANTGGAATCCTGCTGATGATATCCCNATTCACAAGAAGAAATATCAGTTTCTTAACATCTGGGTGCTGCGTGAATATTTGCAACATGAATTGGAGATTCCCAACCCTCCTTTTGAGATTGACTTTGAACGACTAGTGGATGATTTTGTATTTCTATGCTTCTTTGTTGGCAATGACTTTCTTCCACATATGCCAACATTAGAAATCAGGGAGGGAGCTATAAATTTATTGATGCATATATATAGAAAGGAATTTACTGCCATCGGTGGTTATCTTACTGATGCGGGTGAGGTTTTCTTAGATAGAGTGGAACGTTTTATCCAGTCTGTTGCTGTTCATGAAGATCAAATCTTTCAAAAACGAGTACGGATTCAGCAGGTTGCAGAAAATAATGAAGAGATGAGAGCTAGGGCAAAAGGAGTAATGCCTGAAGAGCCACGAGCCTCACTTGTTAAGTTAGGGGAGACTGGATACAAGGAAAGGTATTATGCTGAAAAGTTTGGTGTGTCGAATCTGGACGAGATTGATAAGATTAAGAAAGATATAGTCTTGAAATATGTGGAAGGCCTTTGTTGGGTTTGCCGGTACTATCCATATCATTATGCTCCTTTTGCTTCTGATCTTGAAGATCTACCTGATGTAGAAATAAATTTTTTCCCGGGAGAGCCATTTAAACCATTTGATCAGCTCATGGGGGTCCTACCTGCTTCAAGTTCAAGTGCACTGCCTGAAAAATATAGGGATTTGATGACTGATCCTTCATCACCTATGTTTCACTTCTACCCTGCTGATTTTGAGATTGATATGAATGGCAAACGATTTGCATGGCAGGGTGTCGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTGCCACAAGGAAGATTGAAGACTCATTAACGGAGGAAGAACAGCTTCAGAATAGTATGATGCTTAATTTACTTTATGTCAACCGGGCACATGATTTGGCTTCACATATTTTATTGCATTACCAAGTTTATGGTCAATCACCCGCGCATGAAAGATGTGTTTCGCCAATCAACACAAATGCTAGCAGTGGTGGGATGAATGGATATCTTTATTTATGTGAGAGAAATGTTCTCAGCTCTATTGTATCGTCTNCCATCGATGGATTGCCAGATATTGAGTGCAATCAAGTCTTACATGGACATATTCCAAAACTTCCAGATGGTGTACTAATACCTAAAAAGATATTAAAAGCCATTGATATCAAACCTTCTCCTGTGCTATGGCATGAAGACAATGTTGGTCGGGGACAGCAAGGCAGAGAGAGNCCACAAGTACCTGGATCAATAGCTGGATCTCAACTAGGAGAAGCAGCTCATCGTCTTGTCAAGAACACCCTCAACATTAAATCGAATAGTTCATCCCATGGATTGTTGGAGCAACCTCCAGTCCACCATACAATGAATAGGCTCCGACCAGCTGGACCNTCTGAATATGGAAAATATTATGGCGAGAACACAAATGGTTATTATGGAGAATATAATCACCATGACATAATGACTAGGCCTAGATATCCAATCTCATCTAATGGTGGGCAGATTGACAGACAGAATTTTAGAGGACAAGATAGGCCGCGGCATCAAGAACAGCTCCAAAATGTGAAGACTGNGTTTTCTGCTAGACCTAAGTCATCGAGGTTACCAAATTCTGGACCAACAACCAATTTAGAACCCCGGTTTGTGCAGAACGTGGGTCCTCGAATACCATCTCCAAAGTGGATTACTAAAGCACCACCTGTAAATGGAGTGTATACTAGACATCAAGAAGCTGCATTGGGGGCAGTACCTCNTGATAAGCAGACGAAGAAGGTTTACCAAGTTAAAACACGTTTGCCCCAAGATACTCCAGATTGTGGGAATCAATAGTGCTTGTGAATTTTGTTTGCCTTGTGCTTGAGGTGCCTTTGTTTCTCTCTCCCGTTCCTCAAATTGGAGCTATGCTCTCTTTATGGCCATCCTAGTTCAACAATCAATCACAGGAGCGCATATTGTACCCGGATGCATTTGATAGAGCATTGATGTTGAAAGCTTTCTGTGATACTTCATACTTATATGCAGTGAAGGTGCCGCTCTGCTTTGCCTTGAATTGACACGGTACCTCGTGATAGTTGTCCAGGCTTTGTAAATGTGCAAGAGCTATAAGATATTTGCTATTTTTCTTGGTTTAGCATGGAACTGGAGTGGGGTAGGCCGGTGGAGAACATCTAACTGGTGTGTTGTTGAACACAATTCGCGGGCTAGGAACCAGCGCAAGTGTTGTTTTGTTCCATACTTCCATAGCATGAAACTAGGTTATTGTGTTCCGTTTGTAAAATCCTGTTGGGCTTACTAACTTCGCTTTACAGTTAACTTGTACATATCTGATGCGAATAGAATTCGATTATGGGAATATTGGAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	945512	954287	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20553	XRN4	EC:3.1.13.-	MAPK signaling pathway - plant	map04016

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000180.1	PF03159.13	XRN_N	1	255	3.10E-106
Glyur000001s00000180.1	PF00098.18	zf-CCHC	264	278	4.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.983
SRR1783600	control	11.084
SRR1783602	moderate drought stress	15.523
SRR1811619	moderate drought stress	15.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.955
DRR006520	Root Summer glycyrrhizin high producing strain	7.970
DRR006521	Root Winter glycyrrhizin high producing strain	13.437
DRR006522	Root Winter glycyrrhizin high producing strain	13.232
DRR006523	Root Summer glycyrrhizin low producing strain	9.625
DRR006524	Root Summer glycyrrhizin low producing strain	9.851
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.411
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.066
SRR2868004	Drought Stress (root)	24.863
SRR2967015	Control (root)	25.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.140
SRR9715740	Leaf	10.231
SRR9715741	Leaf	10.047
SRR9715739	Root	2.553
SRR9715742	Root	9.172
SRR9715743	Root	9.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.452
SRR8749028	MeJA induced 9h	11.882
SRR8749029	MeJA induced 9h	5.996
SRR8749030	Uninduced	13.710
SRR8749031	Uninduced	4.644
SRR8749032	Uninduced	4.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.905
SRR8400027	Control - Root	17.771