Gene detail

Gene detail information of Glyur000001s00000179.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14880.4	1.00E-111	O-acetylserine (thiol) lyase (OAS-TL) isoform A1
NR	XP_003591034.1	1.32E-177	Cysteine synthase [Medicago truncatula]
COG	YP_591171.1	9.00E-108	cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q43317\|CYSK_CITLA	2.00E-167	Cysteine synthase
trEMBL	tr\|G7I7E9\|G7I7E9_MEDTR	5.00E-178	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}

Sequence

Transcript Sequence

>Glyur000001s00000179.1
ATAGAACACATTTCTTCTTCCCATTGGTGTTAGCGTCTCCTTCTACAAGTACAGACAACTCTATTTCTGTTTTCACAAGCAACTCGACTCTGACCCGAATTGCTCTGCTTGGATAACAGAACACCCTGCTGGCTGCTGGATAGTCGACACTCAACCAATCCAATTCCTGGTAAAAATGGCGGAAGACAAGTTAACCATCGCAAAGGATGTCACCCAATTAATTGGCAAAACTCCATTGGTATATCTCAACCATGTTGTGGATGGTTGTGTTGCCCAAATTGCTGCAAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGATACAGCATGATTGCAGATGCTGAGGAGAAAGGACTCAATACACCGCATGAAAGTGTCCTTATTGAGCCTACCAGCGGAAACACTGGCATAGGTTTGGCATTCATGGCTGCTGCTAAGGGCTATAAACTTATTATAACCATGCCAGCTTCAATTAGTCTTGAGAGAAGAACCATTCTTCGTGCTTTTGGAGCCGAGTTAGTTCTCACAGATCCAGCCAAGGGTATGAAAGGAGCTGTTCAGAAAGCGGAAGAGATACTGGCAAAGACTCACAATGCTTATATTCTTCAGCAGTTTGAGAATCCTGCCAACCCAAAGAATCAGTTGATTGAAGAGAATTCACTGACTCACTCTCTTCCTCCTATTTTTAGATCCATTATGAAACCACTGGACCAGAGATCTGGTGGGAAAGTTGATGCCCTTGTTTCTGGTATAGGGACTGGAGGTACAGTGACAGGTGCTGGGAAGTATCTGAAAGAGCAGAACCCTGATATTAAGCTATATGGTGTTGAACCACTTGAAAGTCCAGTATTGTCTGGGGGGAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCGGGTGTTCTGGATATTTCTAGTGAAGAAGCTATTGAAACTGCTAAACTTCTTGCATTGAAAGAAGGTTTGCTGGCAAGTAATCATCTTTTGTTAGTGGGGATATCATCCGGTGCTGCTGCCGCTGCTGCAATTGAGATTGCAAAGAGGCCGGAAAATGCTGGAAAACTCGTTGTTGTGGTTTTCCCAAGCTTTGGAGAGCGTTATCTATCATCTGTGCTCTTTGAATCTGTGAAGCGAGAAGCAGAGAATATGATCTTCGATCACTAAACTTAACATGAAGCCATATGAATCTTTTGCTTAATTTTGAAGTCCGAGGCAATTGTAGCATCTCATGTTGTTGTTTGTGTTTGGCATAGATATCAGATATGCTTTTTACATATACATCAGGAAAATAATATGCTTTTTCTGTTGTTTGTAAATTCGAATTCATCGTTTCTATCAGAAGTGCGCGTTTGGAATATTGGGAAAGGACAAGTGAAATTTTAATAAAAGGGATCCATTCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	937393	941471	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01738	cysK	EC:2.5.1.47	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006535 cysteine biosynthetic process from serine

molecular_function
GO:0004124 cysteine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000179.1	PF00291.20	PALP	12	311	3.50E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.548
SRR1783600	control	0.594
SRR1783602	moderate drought stress	1.587
SRR1811619	moderate drought stress	1.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.323
DRR006520	Root Summer glycyrrhizin high producing strain	1.274
DRR006521	Root Winter glycyrrhizin high producing strain	0.968
DRR006522	Root Winter glycyrrhizin high producing strain	1.033
DRR006523	Root Summer glycyrrhizin low producing strain	4.404
DRR006524	Root Summer glycyrrhizin low producing strain	4.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.533
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.651

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.755
SRR2868004	Drought Stress (root)	17.098
SRR2967015	Control (root)	14.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.035
SRR9715740	Leaf	7.014
SRR9715741	Leaf	6.146
SRR9715739	Root	0.084
SRR9715742	Root	0.425
SRR9715743	Root	0.285

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.308
SRR8749028	MeJA induced 9h	10.003
SRR8749029	MeJA induced 9h	5.789
SRR8749030	Uninduced	34.829
SRR8749031	Uninduced	19.511
SRR8749032	Uninduced	14.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.216
SRR8400027	Control - Root	1.104