Gene detail information of Glyur000001s00000173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27980.1 | 5.00E-40 | Seed maturation protein |
| NR | XP_006589172.1 | 1.27E-83 | PREDICTED: late embryogenesis abundant protein D-34-like isoform X1 [Glycine max] |
| Swissprot | tr|P09444|LEA34_GOSHI | 2.00E-42 | Late embryogenesis abundant protein D-34 |
| trEMBL | tr|I1LBH3|I1LBH3_SOYBN | 5.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 891712 | 892688 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000173.1 | PF04927.7 | SMP | 46 | 105 | 2.80E-25 |
| Glyur000001s00000173.1 | PF04927.7 | SMP | 110 | 169 | 2.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.778 |
| SRR1783600 | control | 1.090 |
| SRR1783602 | moderate drought stress | 0.862 |
| SRR1811619 | moderate drought stress | 0.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.771 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.378 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.415 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.212 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.494 |
| SRR2868004 | Drought Stress (root) | 0.486 |
| SRR2967015 | Control (root) | 0.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.243 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.086 |
| SRR9715742 | Root | 0.453 |
| SRR9715743 | Root | 0.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.767 |
| SRR8749028 | MeJA induced 9h | 3.924 |
| SRR8749029 | MeJA induced 9h | 3.522 |
| SRR8749030 | Uninduced | 3.562 |
| SRR8749031 | Uninduced | 4.331 |
| SRR8749032 | Uninduced | 6.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.486 |
| SRR8400027 | Control - Root | 1.021 |