Gene detail

Gene detail information of Glyur000001s00000168

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27950.1	2.00E-160	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_006589166.1	0	PREDICTED: kinesin-like calmodulin-binding protein-like isoform X2 [Glycine max]
Swissprot	tr\|F4JGP4\|ATK5_ARATH	7.00E-43	Kinesin-5
trEMBL	tr\|I1LBH1\|I1LBH1_SOYBN	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000001s00000168.1
ATGCTGGTTTCAAACGGAGAAGAGCAGGTTCTGTTGGTTTCAGAAAATGCAAGTGAGGCTTCAAAGTCAACCTCATTGGATTTGAANCCAGATTCCGTTGATGGGTCCCCACCGGTTTCCACCGTTTACACTGATGTGGGTGTTGTCCCAGAGCACCAAAAGAACGAGCTTGAGCACTTGATATCCAATTTAGAAAGAGAAGTTGAGCAACTGAGGCTCAAGCAGAGGATAGTGGATGAAAAGCGGAGAGAAGCATTGAGTAAGATATTGGACATCAAAGGGAGCATTAGAGTATTTTGTAGAATTCGACCGAATCTGTTAGCAGTGAAGAGAAGAGTTTCTGAACCCGTATCAGCTGGATCAGAGAGAATTCGGGTTAAGTTGGGAGGAACAAGGAAAGATTTTGAGTTTGATAAGGATGGTACAAATGAGCAGCCAGGGATTATTNCTCGTGCTCTTGAGGAGCTCTTTCGACAAGCCTCTATCGACAATTCATCTTCTTTCACTTTTTCAATGAGCATGTTGGAAGTTTACATGGGCAATGTCAGGGATTTGCTGGCTCCAAGACCATCTGGAAGACCATGTGAACCTATGACAAAGTGCAATCTCAACATCCAAACAGATCCAAAGGGATTCATTGAAATTGAAGGTCTCTCAGAAGTGCAAATTTCTGATTGTGCCAAAGCCAGATGGTGGTATAACAAGGGAAGACGGTTCAGATCCACCTCGTGGACTAATGTAAATGAGGCATCAAGCAGGTCACACTGCTTGACGAGGATAAGCATATTTAGACGTGGGGATGCTTCGGAAGCCAAAAGAGAAACGAGTAAATTGTGGATGGTTGATCTTGGAGGCAGTGAGCGGTTGCTAAAAACTGGGGCAAGAGGACAAACACTCGATGAGGGCCGAGCTATTAATCTTTCTCTTTCNGCTTTAGCTGATGTCATTGCAGCTTTGAAGAGGAAGAGGTGTCATGTGCCTTACAGAAATAGCAAGCTGACCCAAATACTAAGAGATTCTCTCGGCTATGGCTCAAAGGTCTTGATGCTGGTGCATATAAGCCCTTCTGAAGAAGATGTTTGTGAGACAATTTGTTCTTTAAACTTTGCAAAGAGAGCGAGAGCAATAGAGTCCAAATCCAATAAAGAAGTGCCACTGGAATTGAAGCAGCAAAGGGAGAAGAAGATTATGGAGCTCGAGGAAGACATTAAGGAAGCTGAAAAGCAACGACAGAATTTAAGGGATCAAATAGAGAAGGTCGAGTCAAAGTTAAGCGAGAGTAAAAAGCTCTTTTCAACCACATATCGTCTTCTGGAAAGTGATGACTTGGCTACCTCTACTAGCCCCAAAGAGGATGTCAAAGAGGTCATTGAAACCCCCAAAGCATCTAAGAAGTCTATCAAAAGAAACTCCTCCAATTCAGTGCCTCGATTCATGAATTCAACTGTTGCTAGTCGACACAGGCAAATCGCTGCAGAACAAGAAATTGGTGGGAGATCAAAAATTTTAAGATCAGTAGTCACCAGAAGTTCCATCCAGTTTCCATGTTCCCAATCACTTAGTTATTCAGATCTCCGCATCAAAGCGATACTGCGAAGTTCAAATGGAAAATCTCNGCATGCTGAAACAAACAATGTTCCAAGTACTGTTTTCACAGAAAGGCCAAAATGCAATGAACTGGAACCAAAAGTCATAACTCCTCGGAGCGTGGCGGTTACATCATCAGATCCAAATTTGCGAGTAACATTGTGCCGTCACAGAAGAAGGATGTCTGATCTGATCTAATTCAGGATTACAAGACATCTTAGTTGCTGATATTTTTAACGCTGTGAAGTGGTTGCTTGTTTAACTTCTTTCAGTTTATATTGTCTTTGACAAATTGTAGTGAAGGGTCTGTTAATAGGTGTGTTTTTCTTGGGGTGTTGATGGTTGGGATCTGTTAATTAATTGTTTAACATGGTCGTTCTTTGTTTTTGAGCTCGTTGGGTCCTATTAGTCATTTGCTTATGTGATTATGTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	867111	870310	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000168.1	PF00225.18	Kinesin	141	376	4.20E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.074
SRR1783600	control	14.949
SRR1783602	moderate drought stress	25.363
SRR1811619	moderate drought stress	24.988

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.993
DRR006520	Root Summer glycyrrhizin high producing strain	23.913
DRR006521	Root Winter glycyrrhizin high producing strain	26.505
DRR006522	Root Winter glycyrrhizin high producing strain	26.242
DRR006523	Root Summer glycyrrhizin low producing strain	19.842
DRR006524	Root Summer glycyrrhizin low producing strain	19.615
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.874

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.893
SRR2868004	Drought Stress (root)	65.306
SRR2967015	Control (root)	64.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.301
SRR9715740	Leaf	30.212
SRR9715741	Leaf	35.744
SRR9715739	Root	2.777
SRR9715742	Root	25.276
SRR9715743	Root	19.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.843
SRR8749028	MeJA induced 9h	29.179
SRR8749029	MeJA induced 9h	15.142
SRR8749030	Uninduced	10.224
SRR8749031	Uninduced	4.345
SRR8749032	Uninduced	8.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.023
SRR8400027	Control - Root	46.420