Gene detail information of Glyur000001s00000157 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08820.2 | 2.00E-45 | vamp/synaptobrevin-associated protein 27-2 |
| NR | KEH43063.1 | 0 | VAMP-associated protein [Medicago truncatula] |
| Swissprot | tr|B9DHD7|VAP22_ARATH | 1.00E-74 | Vesicle-associated protein 2-2, N-terminally processed |
| trEMBL | tr|A0A072VNR5|A0A072VNR5_MEDTR | 0 | VAMP-associated protein {ECO:0000313|EMBL:KEH43063.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 796024 | 801192 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000157.1 | PF00635.21 | Motile_Sperm | 7 | 104 | 1.60E-29 |
| Glyur000001s00000157.2 | PF00635.21 | Motile_Sperm | 7 | 104 | 1.50E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.242 |
| SRR1783600 | control | 21.707 |
| SRR1783602 | moderate drought stress | 18.669 |
| SRR1811619 | moderate drought stress | 18.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.720 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.256 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 127.661 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 127.653 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.156 |
| SRR2868004 | Drought Stress (root) | 25.331 |
| SRR2967015 | Control (root) | 26.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.392 |
| SRR9715740 | Leaf | 20.293 |
| SRR9715741 | Leaf | 17.495 |
| SRR9715739 | Root | 6.885 |
| SRR9715742 | Root | 27.492 |
| SRR9715743 | Root | 25.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.593 |
| SRR8749028 | MeJA induced 9h | 23.318 |
| SRR8749029 | MeJA induced 9h | 26.865 |
| SRR8749030 | Uninduced | 27.279 |
| SRR8749031 | Uninduced | 14.422 |
| SRR8749032 | Uninduced | 12.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.733 |
| SRR8400027 | Control - Root | 45.066 |